Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UMG entry

There are 6 chains in PDB entry 9UMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	TYR 122
B	VAL 21	LYS 121
C	VAL 21	ASN 123
D	ARG 196	LEU 722
E	ALA 203	GLU 806
F	SER 760	PHE 869

There are 38 helices in PDB entry 9UMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	54	Right-handed alpha
Helix 2	AA2	A	55	89	Right-handed alpha
Helix 3	AA3	A	100	121	Right-handed alpha
Helix 4	AA4	B	24	53	Right-handed alpha
Helix 5	AA5	B	55	90	Right-handed alpha
Helix 6	AA6	B	100	121	Right-handed alpha
Helix 7	AA7	C	23	54	Right-handed alpha
Helix 8	AA8	C	55	90	Right-handed alpha
Helix 9	AA9	C	99	122	Right-handed alpha
Helix 10	AB1	D	207	217	Right-handed alpha
Helix 11	AB2	D	247	255	Right-handed alpha
Helix 12	AB3	D	303	309	Right-handed alpha
Helix 13	AB4	D	313	318	Right-handed alpha
Helix 14	AB5	D	318	325	Right-handed alpha
Helix 15	AB6	D	328	350	Right-handed alpha
Helix 16	AB7	D	438	447	Right-handed alpha
Helix 17	AB8	D	457	467	Right-handed alpha
Helix 18	AB9	D	477	481	Right-handed 310
Helix 19	AC1	D	620	651	Right-handed alpha
Helix 20	AC2	D	653	659	Right-handed alpha
Helix 21	AC3	D	660	687	Right-handed alpha
Helix 22	AC4	D	696	719	Right-handed alpha
Helix 23	AC5	E	213	215	Right-handed 310
Helix 24	AC6	E	216	226	Right-handed alpha
Helix 25	AC7	E	306	314	Right-handed alpha
Helix 26	AC8	E	329	333	Right-handed 310
Helix 27	AC9	E	365	371	Right-handed alpha
Helix 28	AD1	E	375	386	Right-handed alpha
Helix 29	AD2	E	391	413	Right-handed alpha
Helix 30	AD3	E	509	516	Right-handed alpha
Helix 31	AD4	E	528	536	Right-handed alpha
Helix 32	AD5	E	549	553	Right-handed 310
Helix 33	AD6	E	697	726	Right-handed alpha
Helix 34	AD7	E	733	769	Right-handed alpha
Helix 35	AD8	E	777	806	Right-handed alpha
Helix 36	AD9	F	761	796	Right-handed alpha
Helix 37	AE1	F	806	835	Right-handed alpha
Helix 38	AE2	F	842	869	Right-handed alpha

There are 7 sheets in PDB entry 9UMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	17	18	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	275	285	anti-parallel
Strand 3	D	264	268	anti-parallel
Strand 4	D	236	243	anti-parallel
Strand 5	D	352	364	anti-parallel
Strand 6	D	374	384	anti-parallel
Strand 7	D	417	419	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	300	first strand
Strand 2	D	275	285	anti-parallel
Strand 3	D	264	268	anti-parallel
Strand 4	D	236	243	anti-parallel
Strand 5	D	352	364	anti-parallel
Strand 6	D	374	384	anti-parallel
Strand 7	D	423	429	anti-parallel
Strand 8	D	197	203	anti-parallel
Strand 9	D	451	452	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	E	231	233	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	612	613	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	211	first strand
Strand 2	E	491	496	anti-parallel
Strand 3	E	435	447	anti-parallel
Strand 4	E	415	428	anti-parallel
Strand 5	E	296	302	anti-parallel
Strand 6	E	320	327	anti-parallel
Strand 7	E	336	343	anti-parallel
Strand 8	E	354	361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	211	first strand
Strand 2	E	491	496	anti-parallel
Strand 3	E	435	447	anti-parallel
Strand 4	E	486	487	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMG