Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UMJ entry

There are 7 chains in PDB entry 9UMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PHE 3	LEU 8
D	ARG 10	ARG 10
C	PRO 17	ILE 443
A	SER 6	TYR 354
B	GLU 3	ASN 340
G	ALA 7	ARG 62
H	ASP 1	LYS 248

There are 25 helices in PDB entry 9UMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	51	Right-handed alpha
Helix 2	AA2	C	55	82	Right-handed alpha
Helix 3	AA3	C	92	126	Right-handed alpha
Helix 4	AA4	C	126	134	Right-handed alpha
Helix 5	AA5	C	135	161	Right-handed alpha
Helix 6	AA6	C	323	357	Right-handed alpha
Helix 7	AA7	C	364	393	Right-handed alpha
Helix 8	AA8	C	400	429	Right-handed alpha
Helix 9	AA9	C	432	443	Right-handed alpha
Helix 10	AB1	A	8	31	Right-handed alpha
Helix 11	AB2	A	45	52	Right-handed alpha
Helix 12	AB3	A	208	217	Right-handed 310
Helix 13	AB4	A	247	256	Right-handed alpha
Helix 14	AB5	A	257	261	Right-handed 310
Helix 15	AB6	A	271	282	Right-handed alpha
Helix 16	AB7	A	296	310	Right-handed alpha
Helix 17	AB8	A	330	351	Right-handed alpha
Helix 18	AB9	B	4	25	Right-handed alpha
Helix 19	AC1	B	29	34	Right-handed alpha
Helix 20	AC2	G	8	23	Right-handed alpha
Helix 21	AC3	G	29	44	Right-handed alpha
Helix 22	AC4	G	45	48	Right-handed 310
Helix 23	AC5	H	28	32	Right-handed 310
Helix 24	AC6	H	87	91	Right-handed 310
Helix 25	AC7	H	220	224	Right-handed 310

There are 12 sheets in PDB entry 9UMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	221	227	parallel
Strand 5	A	264	270	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	211	216	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	186	190	anti-parallel
Strand 3	H	174	179	anti-parallel
Strand 4	H	225	231	anti-parallel
Strand 5	H	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMJ