Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UMK entry

There is 1 chain in PDB entry 9UMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7SER 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 9UMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-5 1Right-handed alpha
Helix 2
AA2
A
3 11Right-handed alpha
Helix 3
AA3
A
12 25Right-handed alpha
Helix 4
AA4
A
27 32Right-handed 310
Helix 5
AA5
A
40 58Right-handed alpha
Helix 6
AA6
A
60 79Right-handed alpha
Helix 7
AA7
A
100 114Right-handed alpha
Helix 8
AA8
A
135 139Right-handed 310
Helix 9
AA9
A
148 169Right-handed alpha
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
196 200Right-handed 310
Helix 12
AB3
A
201 203Right-handed 310
Helix 13
AB4
A
241 250Right-handed alpha
Helix 14
AB5
A
251 259Right-handed alpha
Helix 15
AB6
A
274 289Right-handed alpha
Helix 16
AB7
A
323 333Right-handed alpha
Helix 17
AB8
A
361 372Right-handed alpha
Helix 18
AB9
A
400 408Right-handed 310
Helix 19
AC1
A
420 425Right-handed alpha
Helix 20
AC2
A
431 441Right-handed alpha
Helix 21
AC3
A
447 466Right-handed alpha
Helix 22
AC4
A
492 497Right-handed alpha
Helix 23
AC5
A
498 506Right-handed alpha
Helix 24
AC6
A
570 575Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9UMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
307 312anti-parallel
Strand 3
A
317 322anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
414 419parallel
Strand 3
A
292 297parallel
Strand 4
A
352 360anti-parallel
Strand 5
A
263 267anti-parallel
Strand 6
A
117 122parallel
Strand 7
A
176 180parallel
Strand 8
A
205 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
397 398anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
481 483anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
516 520parallel
Strand 3
A
535 540parallel
Strand 4
A
586 590parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 511first strand
Strand 2
A
530 533parallel
Strand 3
A
551 554parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 527first strand
Strand 2
A
544 548parallel
Strand 3
A
594 598parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 562first strand
Strand 2
A
578 582anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il