Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UMM entry

There are 2 chains in PDB entry 9UMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 10ALA 324
B
 ILE 10ALA 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9UMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed alpha
Helix 2
AA2
A
58 65Right-handed alpha
Helix 3
AA3
A
67 76Right-handed alpha
Helix 4
AA4
A
91 97Right-handed alpha
Helix 5
AA5
A
107 123Right-handed alpha
Helix 6
AA6
A
176 194Right-handed alpha
Helix 7
AA7
A
253 269Right-handed alpha
Helix 8
AA8
A
278 281Right-handed 310
Helix 9
AA9
A
282 288Right-handed alpha
Helix 10
AB1
A
289 292Right-handed 310
Helix 11
AB2
A
307 309Right-handed 310
Helix 12
AB3
A
310 323Right-handed alpha
Helix 13
AB4
B
20 27Right-handed alpha
Helix 14
AB5
B
58 65Right-handed alpha
Helix 15
AB6
B
67 76Right-handed alpha
Helix 16
AB7
B
91 97Right-handed alpha
Helix 17
AB8
B
107 123Right-handed alpha
Helix 18
AB9
B
176 194Right-handed alpha
Helix 19
AC1
B
201 205Right-handed 310
Helix 20
AC2
B
252 270Right-handed alpha
Helix 21
AC3
B
278 281Right-handed 310
Helix 22
AC4
B
282 288Right-handed alpha
Helix 23
AC5
B
307 309Right-handed 310
Helix 24
AC6
B
310 323Right-handed alpha
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There are 7 sheets in PDB entry 9UMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
11 16parallel
Strand 3
A
299 304parallel
Strand 4
A
80 85parallel
Strand 5
A
223 232parallel
Strand 6
A
206 217anti-parallel
Strand 7
A
127 139anti-parallel
Strand 8
A
142 145anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
11 16parallel
Strand 3
A
299 304parallel
Strand 4
A
80 85parallel
Strand 5
A
223 232parallel
Strand 6
A
206 217anti-parallel
Strand 7
A
127 139anti-parallel
Strand 8
A
172 174anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
45 48anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
165 166anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
11 16parallel
Strand 3
B
299 304parallel
Strand 4
B
80 85parallel
Strand 5
B
223 232parallel
Strand 6
B
206 217anti-parallel
Strand 7
B
127 139anti-parallel
Strand 8
B
142 145anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
11 16parallel
Strand 3
B
299 304parallel
Strand 4
B
80 85parallel
Strand 5
B
223 232parallel
Strand 6
B
206 217anti-parallel
Strand 7
B
127 139anti-parallel
Strand 8
B
172 174anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
45 48anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il