Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UMS entry

There are 5 chains in PDB entry 9UMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 81	ILE 238
C	ILE 77	LYS 533
A	MET 1	LYS 188
E	MET 1	LYS 188
D	ILE 77	LYS 533

There are 47 helices in PDB entry 9UMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	85	87	Right-handed 310
Helix 2	AA2	B	88	106	Right-handed alpha
Helix 3	AA3	B	233	237	Right-handed 310
Helix 4	AA4	C	86	98	Right-handed alpha
Helix 5	AA5	C	100	115	Right-handed alpha
Helix 6	AA6	C	136	140	Right-handed 310
Helix 7	AA7	C	141	152	Right-handed alpha
Helix 8	AA8	C	152	171	Right-handed alpha
Helix 9	AA9	C	191	197	Right-handed 310
Helix 10	AB1	C	218	222	Right-handed 310
Helix 11	AB2	C	260	264	Right-handed 310
Helix 12	AB3	C	281	303	Right-handed alpha
Helix 13	AB4	C	316	344	Right-handed alpha
Helix 14	AB5	C	376	379	Right-handed 310
Helix 15	AB6	C	380	395	Right-handed alpha
Helix 16	AB7	C	397	402	Right-handed alpha
Helix 17	AB8	C	415	419	Right-handed 310
Helix 18	AB9	C	420	450	Right-handed alpha
Helix 19	AC1	C	470	500	Right-handed alpha
Helix 20	AC2	C	500	506	Right-handed alpha
Helix 21	AC3	C	508	516	Right-handed alpha
Helix 22	AC4	C	524	532	Right-handed alpha
Helix 23	AC5	A	2	13	Right-handed alpha
Helix 24	AC6	A	21	40	Right-handed alpha
Helix 25	AC7	A	119	146	Right-handed alpha
Helix 26	AC8	A	155	174	Right-handed alpha
Helix 27	AC9	E	2	13	Right-handed alpha
Helix 28	AD1	E	21	40	Right-handed alpha
Helix 29	AD2	E	119	146	Right-handed alpha
Helix 30	AD3	E	155	174	Right-handed alpha
Helix 31	AD4	D	86	98	Right-handed alpha
Helix 32	AD5	D	100	115	Right-handed alpha
Helix 33	AD6	D	136	140	Right-handed 310
Helix 34	AD7	D	141	152	Right-handed alpha
Helix 35	AD8	D	152	171	Right-handed alpha
Helix 36	AD9	D	191	197	Right-handed 310
Helix 37	AE1	D	260	264	Right-handed 310
Helix 38	AE2	D	280	303	Right-handed alpha
Helix 39	AE3	D	316	344	Right-handed alpha
Helix 40	AE4	D	380	395	Right-handed alpha
Helix 41	AE5	D	397	402	Right-handed alpha
Helix 42	AE6	D	416	419	Right-handed 310
Helix 43	AE7	D	420	450	Right-handed alpha
Helix 44	AE8	D	470	500	Right-handed alpha
Helix 45	AE9	D	500	505	Right-handed alpha
Helix 46	AF1	D	509	516	Right-handed alpha
Helix 47	AF2	D	524	532	Right-handed alpha

There are 15 sheets in PDB entry 9UMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	146	152	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	222	229	anti-parallel
Strand 5	B	203	216	anti-parallel
Strand 6	B	191	197	anti-parallel
Strand 7	B	110	115	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	140	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	169	170	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	461	462	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	184	189	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	213	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	267	268	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	311	first strand
Strand 2	C	365	372	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	C	351	358	anti-parallel
Strand 3	D	304	311	parallel
Strand 4	D	366	372	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	97	102	anti-parallel
Strand 3	A	65	69	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	77	81	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	97	102	anti-parallel
Strand 3	E	65	69	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	57	first strand
Strand 2	E	84	87	anti-parallel
Strand 3	E	78	80	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	461	464	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	180	first strand
Strand 2	D	184	189	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	213	first strand
Strand 2	D	199	204	anti-parallel
Strand 3	D	267	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMS