Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UMU entry

There are 3 chains in PDB entry 9UMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 437
B	MET 1	ALA 430
J	SER 9	LYS 325

There are 50 helices in PDB entry 9UMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	74	81	Right-handed alpha
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	108	129	Right-handed alpha
Helix 7	AA7	A	143	161	Right-handed alpha
Helix 8	AA8	A	182	195	Right-handed alpha
Helix 9	AA9	A	206	216	Right-handed alpha
Helix 10	AB1	A	223	244	Right-handed alpha
Helix 11	AB2	A	251	260	Right-handed alpha
Helix 12	AB3	A	277	284	Right-handed alpha
Helix 13	AB4	A	287	296	Right-handed alpha
Helix 14	AB5	A	297	301	Right-handed 310
Helix 15	AB6	A	324	339	Right-handed alpha
Helix 16	AB7	A	383	401	Right-handed alpha
Helix 17	AB8	A	404	410	Right-handed alpha
Helix 18	AB9	A	415	435	Right-handed alpha
Helix 19	AC1	B	10	28	Right-handed alpha
Helix 20	AC2	B	41	45	Right-handed 310
Helix 21	AC3	B	46	49	Right-handed 310
Helix 22	AC4	B	71	78	Right-handed alpha
Helix 23	AC5	B	81	85	Right-handed 310
Helix 24	AC6	B	86	90	Right-handed 310
Helix 25	AC7	B	100	107	Right-handed alpha
Helix 26	AC8	B	108	127	Right-handed alpha
Helix 27	AC9	B	146	159	Right-handed alpha
Helix 28	AD1	B	180	196	Right-handed alpha
Helix 29	AD2	B	203	213	Right-handed alpha
Helix 30	AD3	B	221	242	Right-handed alpha
Helix 31	AD4	B	249	258	Right-handed alpha
Helix 32	AD5	B	285	294	Right-handed alpha
Helix 33	AD6	B	295	299	Right-handed 310
Helix 34	AD7	B	323	337	Right-handed alpha
Helix 35	AD8	B	338	340	Right-handed 310
Helix 36	AD9	B	374	391	Right-handed alpha
Helix 37	AE1	B	394	399	Right-handed alpha
Helix 38	AE2	B	400	402	Right-handed 310
Helix 39	AE3	B	404	427	Right-handed alpha
Helix 40	AE4	J	20	27	Right-handed alpha
Helix 41	AE5	J	58	64	Right-handed alpha
Helix 42	AE6	J	66	76	Right-handed alpha
Helix 43	AE7	J	91	97	Right-handed alpha
Helix 44	AE8	J	107	121	Right-handed alpha
Helix 45	AE9	J	176	191	Right-handed alpha
Helix 46	AF1	J	248	271	Right-handed alpha
Helix 47	AF2	J	282	289	Right-handed alpha
Helix 48	AF3	J	290	292	Right-handed 310
Helix 49	AF4	J	307	309	Right-handed 310
Helix 50	AF5	J	310	323	Right-handed alpha

There are 10 sheets in PDB entry 9UMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	65	68	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	139	parallel
Strand 5	A	165	171	parallel
Strand 6	A	200	204	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	61	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	374	381	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	354	356	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	3	9	parallel
Strand 3	B	130	137	parallel
Strand 4	B	164	168	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	265	266	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	364	371	anti-parallel
Strand 3	B	310	318	anti-parallel
Strand 4	B	349	353	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	53	first strand
Strand 2	J	11	15	parallel
Strand 3	J	299	303	parallel
Strand 4	J	83	84	parallel
Strand 5	J	222	232	parallel
Strand 6	J	206	217	anti-parallel
Strand 7	J	132	138	anti-parallel
Strand 8	J	143	145	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	127	129	first strand
Strand 2	J	206	217	anti-parallel
Strand 3	J	132	138	anti-parallel
Strand 4	J	172	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	35	first strand
Strand 2	J	39	42	anti-parallel
Strand 3	J	45	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMU