Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UMX entry

There are 7 chains in PDB entry 9UMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 32	SER 314
B	SER 6	TYR 354
C	GLU 3	ASN 340
G	ALA 7	ARG 62
H	ASP 1	LEU 247
D	TYR 1	LEU 8
D	ARG 10	ARG 10

There are 26 helices in PDB entry 9UMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	53	Right-handed alpha
Helix 2	AA2	A	54	64	Right-handed alpha
Helix 3	AA3	A	69	71	Right-handed 310
Helix 4	AA4	A	72	87	Right-handed alpha
Helix 5	AA5	A	88	98	Right-handed alpha
Helix 6	AA6	A	105	110	Right-handed alpha
Helix 7	AA7	A	111	140	Right-handed alpha
Helix 8	AA8	A	140	147	Right-handed alpha
Helix 9	AA9	A	152	174	Right-handed alpha
Helix 10	AB1	A	199	230	Right-handed alpha
Helix 11	AB2	A	239	255	Right-handed alpha
Helix 12	AB3	A	255	267	Right-handed alpha
Helix 13	AB4	A	272	303	Right-handed alpha
Helix 14	AB5	A	309	314	Right-handed alpha
Helix 15	AB6	B	9	30	Right-handed alpha
Helix 16	AB7	B	45	53	Right-handed alpha
Helix 17	AB8	B	208	217	Right-handed 310
Helix 18	AB9	B	245	256	Right-handed alpha
Helix 19	AC1	B	271	282	Right-handed alpha
Helix 20	AC2	B	296	310	Right-handed alpha
Helix 21	AC3	B	330	351	Right-handed alpha
Helix 22	AC4	C	4	26	Right-handed alpha
Helix 23	AC5	C	29	37	Right-handed 310
Helix 24	AC6	G	8	24	Right-handed alpha
Helix 25	AC7	G	29	44	Right-handed alpha
Helix 26	AC8	H	28	32	Right-handed 310

There are 14 sheets in PDB entry 9UMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	187	190	anti-parallel
Strand 3	D	4	5	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	33	37	parallel
Strand 4	B	221	222	parallel
Strand 5	B	264	270	parallel
Strand 6	B	225	227	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	33	37	parallel
Strand 4	B	221	222	parallel
Strand 5	B	264	270	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	336	340	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	70	73	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	134	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	241	245	anti-parallel
Strand 3	C	250	252	anti-parallel
Strand 4	C	262	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	142	first strand
Strand 2	H	155	160	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	208	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UMX