Analysis of interatomic Contacts of Structural Units in PDB entry:
9UO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UO4 entry

There are 12 chains in PDB entry 9UO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 345	LYS 558
B	ILE 345	LYS 558
C	ILE 345	LYS 558
D	ILE 345	LYS 558
E	ILE 345	LYS 558
F	ILE 345	LYS 558
G	ILE 345	LYS 558
H	ILE 345	LYS 558
I	ILE 345	LYS 558
J	ILE 345	LYS 558
K	ILE 345	LYS 558
L	ILE 345	LYS 558

There are 48 helices in PDB entry 9UO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	358	Right-handed alpha
Helix 2	AA2	A	414	420	Right-handed alpha
Helix 3	AA3	A	460	467	Right-handed alpha
Helix 4	AA4	A	524	530	Right-handed alpha
Helix 5	AA5	B	353	358	Right-handed alpha
Helix 6	AA6	B	414	419	Right-handed alpha
Helix 7	AA7	B	460	467	Right-handed alpha
Helix 8	AA8	B	524	530	Right-handed alpha
Helix 9	AA9	C	353	360	Right-handed alpha
Helix 10	AB1	C	414	420	Right-handed alpha
Helix 11	AB2	C	460	465	Right-handed alpha
Helix 12	AB3	C	524	529	Right-handed alpha
Helix 13	AB4	D	353	360	Right-handed alpha
Helix 14	AB5	D	414	420	Right-handed alpha
Helix 15	AB6	D	460	466	Right-handed alpha
Helix 16	AB7	D	525	530	Right-handed alpha
Helix 17	AB8	E	353	360	Right-handed alpha
Helix 18	AB9	E	414	420	Right-handed alpha
Helix 19	AC1	E	462	467	Right-handed alpha
Helix 20	AC2	E	524	529	Right-handed alpha
Helix 21	AC3	F	353	361	Right-handed alpha
Helix 22	AC4	F	414	421	Right-handed alpha
Helix 23	AC5	F	460	467	Right-handed alpha
Helix 24	AC6	F	524	529	Right-handed alpha
Helix 25	AC7	G	353	358	Right-handed alpha
Helix 26	AC8	G	414	421	Right-handed alpha
Helix 27	AC9	G	460	467	Right-handed alpha
Helix 28	AD1	G	524	530	Right-handed alpha
Helix 29	AD2	H	353	360	Right-handed alpha
Helix 30	AD3	H	414	420	Right-handed alpha
Helix 31	AD4	H	460	465	Right-handed alpha
Helix 32	AD5	H	525	529	Right-handed alpha
Helix 33	AD6	I	353	361	Right-handed alpha
Helix 34	AD7	I	414	419	Right-handed alpha
Helix 35	AD8	I	460	467	Right-handed alpha
Helix 36	AD9	I	524	530	Right-handed alpha
Helix 37	AE1	J	353	361	Right-handed alpha
Helix 38	AE2	J	414	421	Right-handed alpha
Helix 39	AE3	J	460	466	Right-handed alpha
Helix 40	AE4	J	524	530	Right-handed alpha
Helix 41	AE5	K	355	360	Right-handed alpha
Helix 42	AE6	K	414	419	Right-handed alpha
Helix 43	AE7	K	460	465	Right-handed alpha
Helix 44	AE8	K	524	530	Right-handed alpha
Helix 45	AE9	L	353	360	Right-handed alpha
Helix 46	AF1	L	414	419	Right-handed alpha
Helix 47	AF2	L	460	467	Right-handed alpha
Helix 48	AF3	L	524	530	Right-handed alpha

There are 50 sheets in PDB entry 9UO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	473	479	anti-parallel
Strand 3	A	515	517	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	519	523	anti-parallel
Strand 3	A	500	502	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	490	first strand
Strand 2	A	534	539	anti-parallel
Strand 3	A	547	552	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	411	413	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	473	477	anti-parallel
Strand 3	B	516	520	anti-parallel
Strand 4	B	501	503	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	522	523	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	548	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	473	479	anti-parallel
Strand 3	C	515	516	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	522	523	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	495	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	534	539	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	503	first strand
Strand 2	C	518	519	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	427	428	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	425	first strand
Strand 2	D	440	441	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	469	477	anti-parallel
Strand 3	D	518	524	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	489	first strand
Strand 2	D	534	539	anti-parallel
Strand 3	D	547	548	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	489	first strand
Strand 2	D	534	539	anti-parallel
Strand 3	D	551	552	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	507	first strand
Strand 2	D	515	516	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	350	first strand
Strand 2	E	366	369	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	412	413	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	519	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	517	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	486	490	first strand
Strand 2	E	534	539	anti-parallel
Strand 3	E	547	552	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	484	490	anti-parallel
Strand 3	F	534	540	anti-parallel
Strand 4	F	547	552	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	350	first strand
Strand 2	G	366	368	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	363	364	first strand
Strand 2	G	412	413	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	470	473	first strand
Strand 2	G	515	523	anti-parallel
Strand 3	G	476	479	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	470	473	first strand
Strand 2	G	515	523	anti-parallel
Strand 3	G	501	507	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	485	489	first strand
Strand 2	G	534	539	anti-parallel
Strand 3	G	547	552	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	365	first strand
Strand 2	H	411	413	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	473	477	anti-parallel
Strand 3	H	515	517	anti-parallel
Strand 4	H	506	507	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	469	471	first strand
Strand 2	H	522	524	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	485	489	first strand
Strand 2	H	534	539	anti-parallel
Strand 3	H	547	552	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	381	383	first strand
Strand 2	I	425	427	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	455	457	first strand
Strand 2	I	473	479	anti-parallel
Strand 3	I	515	523	anti-parallel
Strand 4	I	500	502	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	470	471	first strand
Strand 2	I	515	523	anti-parallel
Strand 3	I	506	507	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	493	494	first strand
Strand 2	I	484	490	anti-parallel
Strand 3	I	534	540	anti-parallel
Strand 4	I	547	550	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	454	457	first strand
Strand 2	J	473	476	anti-parallel
Strand 3	J	517	523	anti-parallel
Strand 4	J	470	471	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	454	457	first strand
Strand 2	J	473	476	anti-parallel
Strand 3	J	517	523	anti-parallel
Strand 4	J	500	502	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	493	494	first strand
Strand 2	J	485	490	anti-parallel
Strand 3	J	534	539	anti-parallel
Strand 4	J	547	552	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	454	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	519	523	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	454	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	515	517	anti-parallel
Strand 4	K	506	507	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	488	490	anti-parallel
Strand 3	K	534	536	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	363	365	first strand
Strand 2	L	411	413	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	378	381	first strand
Strand 2	L	427	430	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	455	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	455	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	517	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	485	489	first strand
Strand 2	L	534	539	anti-parallel
Strand 3	L	547	548	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	485	489	first strand
Strand 2	L	534	539	anti-parallel
Strand 3	L	551	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UO4