Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UOC entry

There are 8 chains in PDB entry 9UOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 381	LEU 588
A	GLN 3	SER 125
C	VAL 381	LEU 588
D	GLN 3	SER 125
E	VAL 381	LEU 588
F	GLN 3	SER 125
G	VAL 381	LEU 588
H	LEU 4	THR 119

There are 41 helices in PDB entry 9UOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	385	389	Right-handed 310
Helix 2	AA2	B	411	417	Right-handed alpha
Helix 3	AA3	B	431	435	Right-handed 310
Helix 4	AA4	B	449	457	Right-handed 310
Helix 5	AA5	B	462	468	Right-handed alpha
Helix 6	AA6	B	524	529	Right-handed 310
Helix 7	AA7	B	546	550	Right-handed 310
Helix 8	AA8	A	28	32	Right-handed 310
Helix 9	AA9	A	87	91	Right-handed 310
Helix 10	AB1	A	108	110	Right-handed 310
Helix 11	AB2	C	385	390	Right-handed alpha
Helix 12	AB3	C	410	418	Right-handed alpha
Helix 13	AB4	C	431	435	Right-handed 310
Helix 14	AB5	C	449	452	Right-handed 310
Helix 15	AB6	C	453	458	Right-handed alpha
Helix 16	AB7	C	462	468	Right-handed alpha
Helix 17	AB8	C	524	529	Right-handed 310
Helix 18	AB9	C	546	550	Right-handed 310
Helix 19	AC1	D	28	32	Right-handed 310
Helix 20	AC2	D	87	91	Right-handed 310
Helix 21	AC3	D	102	106	Right-handed 310
Helix 22	AC4	D	108	110	Right-handed 310
Helix 23	AC5	E	385	390	Right-handed alpha
Helix 24	AC6	E	410	417	Right-handed alpha
Helix 25	AC7	E	431	435	Right-handed 310
Helix 26	AC8	E	449	457	Right-handed 310
Helix 27	AC9	E	461	468	Right-handed alpha
Helix 28	AD1	E	524	529	Right-handed 310
Helix 29	AD2	E	546	550	Right-handed 310
Helix 30	AD3	F	28	32	Right-handed 310
Helix 31	AD4	F	87	91	Right-handed 310
Helix 32	AD5	F	108	110	Right-handed 310
Helix 33	AD6	G	410	418	Right-handed alpha
Helix 34	AD7	G	431	435	Right-handed 310
Helix 35	AD8	G	449	461	Right-handed 310
Helix 36	AD9	G	462	468	Right-handed alpha
Helix 37	AE1	G	524	529	Right-handed 310
Helix 38	AE2	G	546	550	Right-handed 310
Helix 39	AE3	H	28	32	Right-handed 310
Helix 40	AE4	H	87	91	Right-handed 310
Helix 41	AE5	H	108	110	Right-handed 310

There are 23 sheets in PDB entry 9UOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	419	426	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	505	first strand
Strand 2	B	553	561	anti-parallel
Strand 3	B	539	544	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	33	39	anti-parallel
Strand 4	A	92	99	anti-parallel
Strand 5	A	112	115	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	33	39	anti-parallel
Strand 4	A	92	99	anti-parallel
Strand 5	A	119	121	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	404	first strand
Strand 2	C	440	446	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	497	506	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	539	544	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	71	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	112	115	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	404	first strand
Strand 2	E	440	447	anti-parallel
Strand 3	E	568	576	anti-parallel
Strand 4	E	477	483	anti-parallel
Strand 5	E	419	426	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	408	409	first strand
Strand 2	E	585	586	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	497	506	first strand
Strand 2	E	553	561	anti-parallel
Strand 3	E	539	544	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	119	123	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	119	123	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	112	115	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	404	first strand
Strand 2	G	438	447	anti-parallel
Strand 3	G	568	577	anti-parallel
Strand 4	G	477	483	anti-parallel
Strand 5	G	419	426	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	404	first strand
Strand 2	G	438	447	anti-parallel
Strand 3	G	582	584	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	506	first strand
Strand 2	G	553	561	anti-parallel
Strand 3	G	539	544	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	19	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	112	115	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	119	121	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOC