Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UOD entry

There is 1 chain in PDB entry 9UOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8ASP 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9UOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
111 116Right-handed 310
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
169 185Right-handed alpha
Helix 8
AA8
A
197 202Right-handed 310
Helix 9
AA9
A
249 259Right-handed alpha
Helix 10
AB1
A
260 265Right-handed 310
Helix 11
AB2
A
268 285Right-handed alpha
Helix 12
AB3
A
302 305Right-handed 310
Helix 13
AB4
A
327 333Right-handed alpha
Helix 14
AB5
A
334 348Right-handed alpha
Helix 15
AB6
A
350 364Right-handed alpha
Helix 16
AB7
A
383 387Right-handed 310
Helix 17
AB8
A
434 450Right-handed alpha
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There are 5 sheets in PDB entry 9UOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
101 108anti-parallel
Strand 3
A
17 19anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
101 108anti-parallel
Strand 3
A
145 151parallel
Strand 4
A
157 164anti-parallel
Strand 5
A
44 51anti-parallel
Strand 6
A
396 398anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
83 87anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
424 433anti-parallel
Strand 3
A
411 418anti-parallel
Strand 4
A
374 378parallel
Strand 5
A
292 297parallel
Strand 6
A
322 326anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il