Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UOF entry

There are 17 chains in PDB entry 9UOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	GLY 741
B	THR 1	GLY 732
C	SER 1	TYR 80
D	ILE 1	ASP 138
E	VAL 1	PRO 64
F	ASP 1	ARG 161
I	MET 1	GLU 34
J	MET 1	ALA 39
L	SER 1	ILE 140
M	MET 1	TYR 29
O	GLU 1	LEU 176
P	PRO 1	PRO 193
Q	LYS 1	PHE 167
R	LEU 1	LYS 88
S	SER 1	GLY 165
U	LEU 1	ALA 141
T	ILE 1	ASP 127

There are150 helices in PDB entry 9UOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	27	31	Right-handed 310
Helix 3	AA3	A	35	44	Right-handed alpha
Helix 4	AA4	A	47	51	Right-handed 310
Helix 5	AA5	A	54	87	Right-handed alpha
Helix 6	AA6	A	89	96	Right-handed alpha
Helix 7	AA7	A	112	117	Right-handed 310
Helix 8	AA8	A	132	140	Right-handed alpha
Helix 9	AA9	A	144	172	Right-handed alpha
Helix 10	AB1	A	176	181	Right-handed alpha
Helix 11	AB2	A	182	193	Right-handed alpha
Helix 12	AB3	A	193	209	Right-handed alpha
Helix 13	AB4	A	209	220	Right-handed alpha
Helix 14	AB5	A	229	234	Right-handed alpha
Helix 15	AB6	A	235	243	Right-handed alpha
Helix 16	AB7	A	244	247	Right-handed 310
Helix 17	AB8	A	250	255	Right-handed alpha
Helix 18	AB9	A	257	264	Right-handed 310
Helix 19	AC1	A	279	298	Right-handed alpha
Helix 20	AC2	A	310	318	Right-handed alpha
Helix 21	AC3	A	329	335	Right-handed alpha
Helix 22	AC4	A	337	363	Right-handed alpha
Helix 23	AC5	A	372	405	Right-handed alpha
Helix 24	AC6	A	414	421	Right-handed alpha
Helix 25	AC7	A	422	454	Right-handed alpha
Helix 26	AC8	A	456	460	Right-handed 310
Helix 27	AC9	A	470	483	Right-handed alpha
Helix 28	AD1	A	496	500	Right-handed 310
Helix 29	AD2	A	518	545	Right-handed alpha
Helix 30	AD3	A	554	559	Right-handed alpha
Helix 31	AD4	A	576	607	Right-handed alpha
Helix 32	AD5	A	624	629	Right-handed alpha
Helix 33	AD6	A	631	639	Right-handed alpha
Helix 34	AD7	A	639	644	Right-handed alpha
Helix 35	AD8	A	644	649	Right-handed alpha
Helix 36	AD9	A	655	678	Right-handed alpha
Helix 37	AE1	A	679	697	Right-handed alpha
Helix 38	AE2	A	709	741	Right-handed alpha
Helix 39	AE3	B	7	12	Right-handed alpha
Helix 40	AE4	B	16	25	Right-handed alpha
Helix 41	AE5	B	28	32	Right-handed 310
Helix 42	AE6	B	36	70	Right-handed alpha
Helix 43	AE7	B	71	76	Right-handed alpha
Helix 44	AE8	B	95	103	Right-handed alpha
Helix 45	AE9	B	117	125	Right-handed alpha
Helix 46	AF1	B	129	155	Right-handed alpha
Helix 47	AF2	B	162	167	Right-handed alpha
Helix 48	AF3	B	168	179	Right-handed alpha
Helix 49	AF4	B	181	195	Right-handed alpha
Helix 50	AF5	B	195	201	Right-handed alpha
Helix 51	AF6	B	220	225	Right-handed alpha
Helix 52	AF7	B	227	232	Right-handed 310
Helix 53	AF8	B	267	286	Right-handed alpha
Helix 54	AF9	B	298	306	Right-handed alpha
Helix 55	AG1	B	308	312	Right-handed 310
Helix 56	AG2	B	319	327	Right-handed alpha
Helix 57	AG3	B	327	353	Right-handed alpha
Helix 58	AG4	B	362	395	Right-handed alpha
Helix 59	AG5	B	404	412	Right-handed alpha
Helix 60	AG6	B	412	444	Right-handed alpha
Helix 61	AG7	B	446	450	Right-handed 310
Helix 62	AG8	B	455	465	Right-handed alpha
Helix 63	AG9	B	474	478	Right-handed 310
Helix 64	AH1	B	481	488	Right-handed alpha
Helix 65	AH2	B	491	500	Right-handed alpha
Helix 66	AH3	B	511	538	Right-handed alpha
Helix 67	AH4	B	547	552	Right-handed 310
Helix 68	AH5	B	569	601	Right-handed alpha
Helix 69	AH6	B	603	611	Right-handed alpha
Helix 70	AH7	B	613	621	Right-handed alpha
Helix 71	AH8	B	621	631	Right-handed alpha
Helix 72	AH9	B	641	664	Right-handed alpha
Helix 73	AI1	B	665	683	Right-handed alpha
Helix 74	AI2	B	685	689	Right-handed 310
Helix 75	AI3	B	699	731	Right-handed alpha
Helix 76	AI4	C	14	20	Right-handed alpha
Helix 77	AI5	C	43	47	Right-handed 310
Helix 78	AI6	C	51	57	Right-handed alpha
Helix 79	AI7	D	19	25	Right-handed alpha
Helix 80	AI8	D	61	77	Right-handed alpha
Helix 81	AI9	D	119	123	Right-handed 310
Helix 82	AJ1	D	125	130	Right-handed 310
Helix 83	AJ2	E	53	55	Right-handed 310
Helix 84	AJ3	F	1	5	Right-handed 310
Helix 85	AJ4	F	11	29	Right-handed alpha
Helix 86	AJ5	F	30	32	Right-handed 310
Helix 87	AJ6	F	36	59	Right-handed alpha
Helix 88	AJ7	F	76	80	Right-handed 310
Helix 89	AJ8	F	83	110	Right-handed alpha
Helix 90	AJ9	F	115	120	Right-handed alpha
Helix 91	AK1	F	122	133	Right-handed alpha
Helix 92	AK2	F	135	146	Right-handed alpha
Helix 93	AK3	F	152	156	Right-handed 310
Helix 94	AK4	I	2	4	Right-handed 310
Helix 95	AK5	I	5	16	Right-handed alpha
Helix 96	AK6	I	16	31	Right-handed alpha
Helix 97	AK7	J	2	10	Right-handed alpha
Helix 98	AK8	J	11	34	Right-handed alpha
Helix 99	AK9	L	8	10	Right-handed 310
Helix 100	AL1	L	18	23	Right-handed alpha
Helix 101	AL2	L	23	33	Right-handed alpha
Helix 102	AL3	L	41	65	Right-handed alpha
Helix 103	AL4	L	72	100	Right-handed alpha
Helix 104	AL5	L	111	138	Right-handed alpha
Helix 105	AL6	M	3	29	Right-handed alpha
Helix 106	AL7	O	29	38	Right-handed alpha
Helix 107	AL8	O	41	68	Right-handed alpha
Helix 108	AL9	O	75	79	Right-handed 310
Helix 109	AM1	O	82	87	Right-handed alpha
Helix 110	AM2	O	91	114	Right-handed alpha
Helix 111	AM3	O	129	135	Right-handed alpha
Helix 112	AM4	O	137	169	Right-handed alpha
Helix 113	AM5	P	13	18	Right-handed alpha
Helix 114	AM6	P	23	27	Right-handed 310
Helix 115	AM7	P	46	51	Right-handed alpha
Helix 116	AM8	P	56	83	Right-handed alpha
Helix 117	AM9	P	89	93	Right-handed 310
Helix 118	AN1	P	96	98	Right-handed 310
Helix 119	AN2	P	99	108	Right-handed alpha
Helix 120	AN3	P	108	126	Right-handed alpha
Helix 121	AN4	P	129	135	Right-handed alpha
Helix 122	AN5	P	157	188	Right-handed alpha
Helix 123	AN6	Q	34	61	Right-handed alpha
Helix 124	AN7	Q	72	84	Right-handed alpha
Helix 125	AN8	Q	84	110	Right-handed alpha
Helix 126	AN9	Q	131	161	Right-handed alpha
Helix 127	AO1	R	15	23	Right-handed 310
Helix 128	AO2	R	26	50	Right-handed alpha
Helix 129	AO3	R	60	68	Right-handed alpha
Helix 130	AO4	R	68	86	Right-handed alpha
Helix 131	AO5	S	2	10	Right-handed alpha
Helix 132	AO6	S	10	15	Right-handed alpha
Helix 133	AO7	S	21	48	Right-handed alpha
Helix 134	AO8	S	59	64	Right-handed alpha
Helix 135	AO9	S	65	68	Right-handed 310
Helix 136	AP1	S	69	73	Right-handed 310
Helix 137	AP2	S	76	99	Right-handed alpha
Helix 138	AP3	S	129	154	Right-handed alpha
Helix 139	AP4	S	157	165	Right-handed alpha
Helix 140	AP5	U	15	20	Right-handed alpha
Helix 141	AP6	U	21	52	Right-handed alpha
Helix 142	AP7	U	63	68	Right-handed alpha
Helix 143	AP8	U	69	71	Right-handed 310
Helix 144	AP9	U	72	96	Right-handed alpha
Helix 145	AQ1	U	106	110	Right-handed 310
Helix 146	AQ2	U	113	141	Right-handed alpha
Helix 147	AQ3	T	2	27	Right-handed alpha
Helix 148	AQ4	T	45	54	Right-handed alpha
Helix 149	AQ5	T	54	78	Right-handed alpha
Helix 150	AQ6	T	103	126	Right-handed alpha

There are 13 sheets in PDB entry 9UOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	173	175	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	125	128	anti-parallel
Strand 3	A	118	119	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	506	first strand
Strand 2	A	509	512	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	617	619	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	111	113	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	B	637	638	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	D	115	116	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	37	40	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	59	first strand
Strand 2	D	27	34	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	92	96	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	47	50	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	20	26	anti-parallel
Strand 4	E	6	9	anti-parallel
Strand 5	E	57	61	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	62	63	anti-parallel
Strand 3	F	69	70	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	16	17	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOF