Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UOI entry

There are 3 chains in PDB entry 9UOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 2SER 126
A
 GLN 1SER 116
B
 VAL 381LEU 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9UOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
63 66Right-handed 310
Helix 2
AA2
C
88 92Right-handed 310
Helix 3
AA3
A
28 32Right-handed 310
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
B
385 390Right-handed 310
Helix 6
AA6
B
395 399Right-handed 310
Helix 7
AA7
B
410 417Right-handed alpha
Helix 8
AA8
B
429 434Right-handed alpha
Helix 9
AA9
B
449 457Right-handed 310
Helix 10
AB1
B
462 468Right-handed alpha
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There are 9 sheets in PDB entry 9UOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
121 125parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
35 41anti-parallel
Strand 5
C
48 54anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
121 125parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
116 117anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
110 114parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
44 51anti-parallel
Strand 6
A
58 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
110 114parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
103 106anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 404first strand
Strand 2
B
440 447anti-parallel
Strand 3
B
568 576anti-parallel
Strand 4
B
477 483anti-parallel
Strand 5
B
419 426anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 409first strand
Strand 2
B
584 586parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 515first strand
Strand 2
B
496 506anti-parallel
Strand 3
B
553 562anti-parallel
Strand 4
B
540 544anti-parallel
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