Analysis of interatomic Contacts of Structural Units in PDB entry:
9UOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UOK entry

There are 4 chains in PDB entry 9UOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 422SER 531
C
 ALA 30PHE 473
E
 SER 34SER 133
F
 ASP 35SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9UOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
467 470Right-handed 310
Helix 2
AA2
A
492 496Right-handed 310
Helix 3
AA3
C
121 126Right-handed alpha
Helix 4
AA4
C
169 175Right-handed alpha
Helix 5
AA5
C
241 247Right-handed 310
Helix 6
AA6
C
337 342Right-handed alpha
Helix 7
AA7
C
405 410Right-handed 310
Helix 8
AA8
F
111 113Right-handed 310
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There are 13 sheets in PDB entry 9UOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
486 488anti-parallel
Strand 3
A
473 475anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
451 458anti-parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
497 504anti-parallel
Strand 5
A
520 521anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
451 458anti-parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
497 504anti-parallel
Strand 5
A
525 527anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 42first strand
Strand 2
C
61 63parallel
Strand 3
C
85 87parallel
Strand 4
C
109 111parallel
Strand 5
C
133 135parallel
Strand 6
C
157 159parallel
Strand 7
C
181 183parallel
Strand 8
C
205 207parallel
Strand 9
C
229 231parallel
Strand 10
C
252 254parallel
Strand 11
C
276 278parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
95 96parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
215 216parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
286 287parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 304first strand
Strand 2
C
323 327parallel
Strand 3
C
347 349parallel
Strand 4
C
369 371parallel
Strand 5
C
393 395parallel
Strand 6
C
417 419parallel
Strand 7
C
438 440parallel
Strand 8
C
461 463parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 46first strand
Strand 2
E
60 67anti-parallel
Strand 3
F
73 77anti-parallel
Strand 4
F
89 92anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 92first strand
Strand 2
E
73 77anti-parallel
Strand 3
F
58 67anti-parallel
Strand 4
F
40 48anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 97first strand
Strand 2
E
127 130anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 109first strand
Strand 2
E
115 123anti-parallel
Strand 3
F
79 80anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 109first strand
Strand 2
F
115 130anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il