Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UP1 entry

There are 4 chains in PDB entry 9UP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 486
B
 ALA 2TYR 486
C
 C 1 C 13
D
 C 6 C 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9UP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
55 72Right-handed alpha
Helix 3
AA3
A
76 84Right-handed alpha
Helix 4
AA4
A
85 100Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
110 115Right-handed alpha
Helix 8
AA8
A
120 139Right-handed alpha
Helix 9
AA9
A
143 147Right-handed 310
Helix 10
AB1
A
163 181Right-handed alpha
Helix 11
AB2
A
194 205Right-handed alpha
Helix 12
AB3
A
226 238Right-handed alpha
Helix 13
AB4
A
242 261Right-handed alpha
Helix 14
AB5
A
267 291Right-handed alpha
Helix 15
AB6
A
309 321Right-handed alpha
Helix 16
AB7
A
327 340Right-handed alpha
Helix 17
AB8
A
344 355Right-handed alpha
Helix 18
AB9
A
357 366Right-handed alpha
Helix 19
AC1
A
373 377Right-handed 310
Helix 20
AC2
A
383 396Right-handed alpha
Helix 21
AC3
A
402 409Right-handed 310
Helix 22
AC4
A
412 419Right-handed 310
Helix 23
AC5
A
425 442Right-handed alpha
Helix 24
AC6
A
444 448Right-handed 310
Helix 25
AC7
A
451 461Right-handed alpha
Helix 26
AC8
A
477 481Right-handed 310
Helix 27
AC9
B
13 28Right-handed alpha
Helix 28
AD1
B
55 72Right-handed alpha
Helix 29
AD2
B
76 84Right-handed alpha
Helix 30
AD3
B
85 100Right-handed alpha
Helix 31
AD4
B
102 104Right-handed 310
Helix 32
AD5
B
105 110Right-handed alpha
Helix 33
AD6
B
110 115Right-handed alpha
Helix 34
AD7
B
120 139Right-handed alpha
Helix 35
AD8
B
143 147Right-handed 310
Helix 36
AD9
B
163 183Right-handed alpha
Helix 37
AE1
B
196 205Right-handed alpha
Helix 38
AE2
B
226 238Right-handed alpha
Helix 39
AE3
B
242 262Right-handed alpha
Helix 40
AE4
B
267 290Right-handed alpha
Helix 41
AE5
B
309 322Right-handed alpha
Helix 42
AE6
B
327 340Right-handed alpha
Helix 43
AE7
B
344 355Right-handed alpha
Helix 44
AE8
B
357 367Right-handed alpha
Helix 45
AE9
B
373 377Right-handed 310
Helix 46
AF1
B
383 396Right-handed alpha
Helix 47
AF2
B
402 409Right-handed 310
Helix 48
AF3
B
412 419Right-handed 310
Helix 49
AF4
B
425 442Right-handed alpha
Helix 50
AF5
B
444 448Right-handed 310
Helix 51
AF6
B
451 461Right-handed alpha
Helix 52
AF7
B
477 481Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 9UP1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
482 486parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
482 485parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il