Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UP2 entry

There are 3 chains in PDB entry 9UP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2789HIS 4279
A
 LEU 4281ILE 4324
B
 ASP 8ASP 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9UP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2793 2802Right-handed alpha
Helix 2
AA2
A
2823 2838Right-handed alpha
Helix 3
AA3
A
2839 2841Right-handed 310
Helix 4
AA4
A
2873 2885Right-handed alpha
Helix 5
AA5
A
2916 2918Right-handed 310
Helix 6
AA6
A
2919 2938Right-handed alpha
Helix 7
AA7
A
2951 2963Right-handed alpha
Helix 8
AA8
A
2964 2970Right-handed 310
Helix 9
AA9
A
2971 2979Right-handed alpha
Helix 10
AB1
A
2996 2998Right-handed 310
Helix 11
AB2
A
3008 3016Right-handed alpha
Helix 12
AB3
A
3018 3022Right-handed 310
Helix 13
AB4
A
3026 3043Right-handed alpha
Helix 14
AB5
A
3086 3100Right-handed alpha
Helix 15
AB6
A
3101 3104Right-handed 310
Helix 16
AB7
A
3105 3112Right-handed alpha
Helix 17
AB8
A
3116 3125Right-handed alpha
Helix 18
AB9
A
3140 3142Right-handed 310
Helix 19
AC1
A
3192 3215Right-handed alpha
Helix 20
AC2
A
3223 3227Right-handed 310
Helix 21
AC3
A
3233 3238Right-handed alpha
Helix 22
AC4
A
3254 3267Right-handed alpha
Helix 23
AC5
A
3286 3301Right-handed alpha
Helix 24
AC6
A
3302 3304Right-handed 310
Helix 25
AC7
A
3341 3356Right-handed alpha
Helix 26
AC8
A
3391 3407Right-handed alpha
Helix 27
AC9
A
3421 3430Right-handed alpha
Helix 28
AD1
A
3432 3444Right-handed alpha
Helix 29
AD2
A
3480 3490Right-handed alpha
Helix 30
AD3
A
3497 3513Right-handed alpha
Helix 31
AD4
A
3534 3538Right-handed 310
Helix 32
AD5
A
3560 3575Right-handed alpha
Helix 33
AD6
A
3576 3578Right-handed 310
Helix 34
AD7
A
3582 3590Right-handed alpha
Helix 35
AD8
A
3611 3621Right-handed alpha
Helix 36
AD9
A
3658 3679Right-handed alpha
Helix 37
AE1
A
3683 3687Right-handed 310
Helix 38
AE2
A
3691 3700Right-handed alpha
Helix 39
AE3
A
3710 3713Right-handed 310
Helix 40
AE4
A
3714 3726Right-handed alpha
Helix 41
AE5
A
3741 3758Right-handed alpha
Helix 42
AE6
A
3773 3786Right-handed alpha
Helix 43
AE7
A
3798 3809Right-handed alpha
Helix 44
AE8
A
3820 3831Right-handed alpha
Helix 45
AE9
A
3842 3848Right-handed alpha
Helix 46
AF1
A
3884 3898Right-handed alpha
Helix 47
AF2
A
3916 3923Right-handed alpha
Helix 48
AF3
A
3924 3927Right-handed 310
Helix 49
AF4
A
3935 3940Right-handed alpha
Helix 50
AF5
A
3941 3952Right-handed alpha
Helix 51
AF6
A
3960 3968Right-handed alpha
Helix 52
AF7
A
3989 4000Right-handed alpha
Helix 53
AF8
A
4024 4029Right-handed 310
Helix 54
AF9
A
4080 4087Right-handed alpha
Helix 55
AG1
A
4133 4143Right-handed alpha
Helix 56
AG2
A
4179 4199Right-handed alpha
Helix 57
AG3
A
4226 4230Right-handed 310
Helix 58
AG4
A
4234 4240Right-handed 310
Helix 59
AG5
A
4248 4263Right-handed alpha
Helix 60
AG6
A
4272 4277Right-handed alpha
Helix 61
AG7
A
4279 4294Right-handed alpha
Helix 62
AG8
A
4301 4306Right-handed alpha
Helix 63
AG9
A
4308 4319Right-handed alpha
Helix 64
AH1
B
43 55Right-handed alpha
Helix 65
AH2
B
60 65Right-handed alpha
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There are 14 sheets in PDB entry 9UP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2865 2869first strand
Strand 2
A
2895 2901parallel
Strand 3
A
2907 2914anti-parallel
Strand 4
A
2811 2818anti-parallel
Strand 5
A
3148 3151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2843 2847first strand
Strand 2
A
2852 2856anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3000 3007first strand
Strand 2
A
3179 3187anti-parallel
Strand 3
A
3169 3176anti-parallel
Strand 4
A
3131 3138parallel
Strand 5
A
3048 3052parallel
Strand 6
A
3077 3081anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3247 3252first strand
Strand 2
A
3317 3321anti-parallel
Strand 3
A
3306 3309anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3328 3332first strand
Strand 2
A
3367 3373parallel
Strand 3
A
3376 3384anti-parallel
Strand 4
A
3274 3281anti-parallel
Strand 5
A
3623 3625anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3472 3478first strand
Strand 2
A
3647 3653anti-parallel
Strand 3
A
3636 3641anti-parallel
Strand 4
A
3601 3604parallel
Strand 5
A
3518 3525parallel
Strand 6
A
3544 3551anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3738 3740first strand
Strand 2
A
3730 3733anti-parallel
Strand 3
A
3930 3933parallel
Strand 4
A
3905 3908parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3789 3793first strand
Strand 2
A
3765 3769parallel
Strand 3
A
3813 3816parallel
Strand 4
A
3838 3841parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3864 3870first strand
Strand 2
A
3878 3883anti-parallel
Strand 3
A
4076 4077anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3956 3959first strand
Strand 2
A
3980 3983parallel
Strand 3
A
4004 4005parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4019 4020first strand
Strand 2
A
4034 4038anti-parallel
Strand 3
A
4115 4120anti-parallel
Strand 4
A
4099 4109anti-parallel
Strand 5
A
4063 4070anti-parallel
Strand 6
A
4042 4047anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4019 4020first strand
Strand 2
A
4034 4038anti-parallel
Strand 3
A
4115 4120anti-parallel
Strand 4
A
4099 4109anti-parallel
Strand 5
A
4088 4090anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4147 4156first strand
Strand 2
A
4161 4169anti-parallel
Strand 3
A
4210 4213parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
36 42anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il