Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UP4 entry

There are 3 chains in PDB entry 9UP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 140PRO 266
F
 ARG 603PRO 613
B
 PRO 140PRO 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9UP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 157Right-handed alpha
Helix 2
AA2
A
163 179Right-handed alpha
Helix 3
AA3
A
180 181Right-handed 310
Helix 4
AA4
A
182 184Right-handed 310
Helix 5
AA5
A
185 197Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
203 216Right-handed alpha
Helix 8
AA8
A
220 230Right-handed alpha
Helix 9
AA9
A
231 246Right-handed alpha
Helix 10
AB1
A
254 263Right-handed alpha
Helix 11
AB2
B
143 157Right-handed alpha
Helix 12
AB3
B
163 179Right-handed alpha
Helix 13
AB4
B
180 181Right-handed 310
Helix 14
AB5
B
182 184Right-handed 310
Helix 15
AB6
B
185 197Right-handed alpha
Helix 16
AB7
B
200 202Right-handed 310
Helix 17
AB8
B
203 216Right-handed alpha
Helix 18
AB9
B
220 230Right-handed alpha
Helix 19
AC1
B
231 246Right-handed alpha
Helix 20
AC2
B
260 265Right-handed alpha
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There are no sheets in PDB entry 9UP4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il