Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UP5 entry

There are 2 chains in PDB entry 9UP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 52GLY 388
B
 ASP 52ASP 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9UP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 63Right-handed alpha
Helix 2
AA2
A
68 83Right-handed alpha
Helix 3
AA3
A
84 98Right-handed alpha
Helix 4
AA4
A
102 121Right-handed alpha
Helix 5
AA5
A
122 135Right-handed alpha
Helix 6
AA6
A
136 155Right-handed alpha
Helix 7
AA7
A
156 171Right-handed alpha
Helix 8
AA8
A
172 174Right-handed 310
Helix 9
AA9
A
175 194Right-handed alpha
Helix 10
AB1
A
195 210Right-handed alpha
Helix 11
AB2
A
213 228Right-handed alpha
Helix 12
AB3
A
229 244Right-handed alpha
Helix 13
AB4
A
247 263Right-handed alpha
Helix 14
AB5
A
264 279Right-handed alpha
Helix 15
AB6
A
281 312Right-handed alpha
Helix 16
AB7
A
314 329Right-handed alpha
Helix 17
AB8
A
332 352Right-handed alpha
Helix 18
AB9
B
54 63Right-handed alpha
Helix 19
AC1
B
69 83Right-handed alpha
Helix 20
AC2
B
84 97Right-handed alpha
Helix 21
AC3
B
102 121Right-handed alpha
Helix 22
AC4
B
122 136Right-handed alpha
Helix 23
AC5
B
136 155Right-handed alpha
Helix 24
AC6
B
156 171Right-handed alpha
Helix 25
AC7
B
175 194Right-handed alpha
Helix 26
AC8
B
195 210Right-handed alpha
Helix 27
AC9
B
213 228Right-handed alpha
Helix 28
AD1
B
229 244Right-handed alpha
Helix 29
AD2
B
247 263Right-handed alpha
Helix 30
AD3
B
264 279Right-handed alpha
Helix 31
AD4
B
281 296Right-handed alpha
Helix 32
AD5
B
297 312Right-handed alpha
Helix 33
AD6
B
314 329Right-handed alpha
Helix 34
AD7
B
332 352Right-handed alpha
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There are 2 sheets in PDB entry 9UP5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
355 357anti-parallel
Strand 3
A
380 382anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
355 357anti-parallel
Strand 3
B
380 382anti-parallel
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