Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UP6 entry

There are 8 chains in PDB entry 9UP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	GLU 382
B	MET 0	GLU 382
C	MET 1	GLU 382
D	MET 0	GLU 382
E	MET 0	GLU 382
F	MET 0	GLU 382
G	MET 0	GLU 382
H	MET 0	GLU 382

There are 82 helices in PDB entry 9UP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	91	Right-handed alpha
Helix 2	AA2	A	103	121	Right-handed alpha
Helix 3	AA3	A	136	140	Right-handed 310
Helix 4	AA4	A	152	162	Right-handed alpha
Helix 5	AA5	A	177	188	Right-handed alpha
Helix 6	AA6	A	199	210	Right-handed alpha
Helix 7	AA7	A	230	238	Right-handed alpha
Helix 8	AA8	A	253	265	Right-handed alpha
Helix 9	AA9	A	312	324	Right-handed alpha
Helix 10	AB1	A	327	336	Right-handed alpha
Helix 11	AB2	A	336	343	Right-handed alpha
Helix 12	AB3	B	76	91	Right-handed alpha
Helix 13	AB4	B	103	121	Right-handed alpha
Helix 14	AB5	B	152	162	Right-handed alpha
Helix 15	AB6	B	177	188	Right-handed alpha
Helix 16	AB7	B	199	210	Right-handed alpha
Helix 17	AB8	B	229	238	Right-handed alpha
Helix 18	AB9	B	253	265	Right-handed alpha
Helix 19	AC1	B	312	324	Right-handed alpha
Helix 20	AC2	B	327	336	Right-handed alpha
Helix 21	AC3	B	336	343	Right-handed alpha
Helix 22	AC4	C	76	91	Right-handed alpha
Helix 23	AC5	C	103	121	Right-handed alpha
Helix 24	AC6	C	136	140	Right-handed 310
Helix 25	AC7	C	152	162	Right-handed alpha
Helix 26	AC8	C	177	188	Right-handed alpha
Helix 27	AC9	C	199	209	Right-handed alpha
Helix 28	AD1	C	229	238	Right-handed alpha
Helix 29	AD2	C	253	265	Right-handed alpha
Helix 30	AD3	C	312	324	Right-handed alpha
Helix 31	AD4	C	327	336	Right-handed alpha
Helix 32	AD5	C	336	343	Right-handed alpha
Helix 33	AD6	D	76	91	Right-handed alpha
Helix 34	AD7	D	103	121	Right-handed alpha
Helix 35	AD8	D	152	162	Right-handed alpha
Helix 36	AD9	D	177	188	Right-handed alpha
Helix 37	AE1	D	199	210	Right-handed alpha
Helix 38	AE2	D	229	238	Right-handed alpha
Helix 39	AE3	D	253	265	Right-handed alpha
Helix 40	AE4	D	312	324	Right-handed alpha
Helix 41	AE5	D	327	336	Right-handed alpha
Helix 42	AE6	D	336	343	Right-handed alpha
Helix 43	AE7	E	76	91	Right-handed alpha
Helix 44	AE8	E	103	121	Right-handed alpha
Helix 45	AE9	E	152	162	Right-handed alpha
Helix 46	AF1	E	177	188	Right-handed alpha
Helix 47	AF2	E	199	210	Right-handed alpha
Helix 48	AF3	E	229	238	Right-handed alpha
Helix 49	AF4	E	253	265	Right-handed alpha
Helix 50	AF5	E	312	324	Right-handed alpha
Helix 51	AF6	E	327	336	Right-handed alpha
Helix 52	AF7	E	336	343	Right-handed alpha
Helix 53	AF8	F	76	91	Right-handed alpha
Helix 54	AF9	F	103	121	Right-handed alpha
Helix 55	AG1	F	152	162	Right-handed alpha
Helix 56	AG2	F	177	188	Right-handed alpha
Helix 57	AG3	F	199	209	Right-handed alpha
Helix 58	AG4	F	229	238	Right-handed alpha
Helix 59	AG5	F	253	265	Right-handed alpha
Helix 60	AG6	F	312	325	Right-handed alpha
Helix 61	AG7	F	327	336	Right-handed alpha
Helix 62	AG8	F	336	343	Right-handed alpha
Helix 63	AG9	G	76	91	Right-handed alpha
Helix 64	AH1	G	103	121	Right-handed alpha
Helix 65	AH2	G	152	162	Right-handed alpha
Helix 66	AH3	G	177	188	Right-handed alpha
Helix 67	AH4	G	199	209	Right-handed alpha
Helix 68	AH5	G	229	238	Right-handed alpha
Helix 69	AH6	G	253	265	Right-handed alpha
Helix 70	AH7	G	312	324	Right-handed alpha
Helix 71	AH8	G	327	336	Right-handed alpha
Helix 72	AH9	G	336	343	Right-handed alpha
Helix 73	AI1	H	76	91	Right-handed alpha
Helix 74	AI2	H	103	121	Right-handed alpha
Helix 75	AI3	H	152	162	Right-handed alpha
Helix 76	AI4	H	177	188	Right-handed alpha
Helix 77	AI5	H	199	210	Right-handed alpha
Helix 78	AI6	H	229	238	Right-handed alpha
Helix 79	AI7	H	253	265	Right-handed alpha
Helix 80	AI8	H	312	324	Right-handed alpha
Helix 81	AI9	H	327	336	Right-handed alpha
Helix 82	AJ1	H	336	343	Right-handed alpha

There are 45 sheets in PDB entry 9UP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	33	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	2	5	anti-parallel
Strand 4	A	42	45	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	15	16	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	360	363	anti-parallel
Strand 3	A	369	374	anti-parallel
Strand 4	A	377	381	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	92	100	parallel
Strand 3	A	128	131	parallel
Strand 4	A	166	171	parallel
Strand 5	A	190	193	parallel
Strand 6	A	213	214	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	66	67	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	268	270	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	290	293	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	15	24	anti-parallel
Strand 3	B	1	10	anti-parallel
Strand 4	B	42	45	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	360	363	anti-parallel
Strand 3	B	369	374	anti-parallel
Strand 4	B	377	381	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	92	100	parallel
Strand 3	B	128	131	parallel
Strand 4	B	166	171	parallel
Strand 5	B	190	193	parallel
Strand 6	B	213	214	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	66	67	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	268	270	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	298	300	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	33	first strand
Strand 2	C	15	24	anti-parallel
Strand 3	C	2	10	anti-parallel
Strand 4	C	42	45	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	360	363	anti-parallel
Strand 3	C	369	374	anti-parallel
Strand 4	C	377	381	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	94	100	parallel
Strand 3	C	128	131	parallel
Strand 4	C	166	171	parallel
Strand 5	C	190	193	parallel
Strand 6	C	211	214	parallel
Strand 7	C	242	245	parallel
Strand 8	C	268	270	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	66	67	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	290	295	anti-parallel
Strand 3	C	298	300	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	33	first strand
Strand 2	D	15	24	anti-parallel
Strand 3	D	1	10	anti-parallel
Strand 4	D	42	45	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	360	363	anti-parallel
Strand 3	D	369	374	anti-parallel
Strand 4	D	377	381	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	92	100	parallel
Strand 3	D	128	131	parallel
Strand 4	D	166	171	parallel
Strand 5	D	190	193	parallel
Strand 6	D	213	214	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	66	67	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	245	first strand
Strand 2	D	268	270	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	290	295	anti-parallel
Strand 3	D	298	301	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	33	first strand
Strand 2	E	15	24	anti-parallel
Strand 3	E	1	10	anti-parallel
Strand 4	E	42	45	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	360	363	anti-parallel
Strand 3	E	369	374	anti-parallel
Strand 4	E	377	381	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	94	100	parallel
Strand 3	E	128	131	parallel
Strand 4	E	166	171	parallel
Strand 5	E	190	193	parallel
Strand 6	E	213	214	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	E	66	67	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	245	first strand
Strand 2	E	268	270	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	33	first strand
Strand 2	F	15	24	anti-parallel
Strand 3	F	1	10	anti-parallel
Strand 4	F	42	45	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	53	first strand
Strand 2	F	360	363	anti-parallel
Strand 3	F	369	374	anti-parallel
Strand 4	F	377	380	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	60	first strand
Strand 2	F	94	100	parallel
Strand 3	F	128	131	parallel
Strand 4	F	166	171	parallel
Strand 5	F	190	193	parallel
Strand 6	F	213	214	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	63	first strand
Strand 2	F	66	67	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	245	first strand
Strand 2	F	268	270	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	287	first strand
Strand 2	F	290	295	anti-parallel
Strand 3	F	298	300	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	33	first strand
Strand 2	G	15	24	anti-parallel
Strand 3	G	1	10	anti-parallel
Strand 4	G	42	45	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	53	first strand
Strand 2	G	360	363	anti-parallel
Strand 3	G	369	374	anti-parallel
Strand 4	G	377	381	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	60	first strand
Strand 2	G	92	100	parallel
Strand 3	G	128	131	parallel
Strand 4	G	166	171	parallel
Strand 5	G	190	193	parallel
Strand 6	G	213	214	parallel
Strand 7	G	242	245	parallel
Strand 8	G	268	270	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	63	first strand
Strand 2	G	66	67	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	287	first strand
Strand 2	G	290	295	anti-parallel
Strand 3	G	298	301	anti-parallel
Strand 4	G	306	308	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	33	first strand
Strand 2	H	15	24	anti-parallel
Strand 3	H	2	10	anti-parallel
Strand 4	H	42	45	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	53	first strand
Strand 2	H	360	363	anti-parallel
Strand 3	H	369	374	anti-parallel
Strand 4	H	377	381	anti-parallel

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There are 8 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	60	first strand
Strand 2	H	92	100	parallel
Strand 3	H	128	131	parallel
Strand 4	H	166	171	parallel
Strand 5	H	190	193	parallel
Strand 6	H	211	214	parallel
Strand 7	H	242	245	parallel
Strand 8	H	268	270	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	63	first strand
Strand 2	H	66	67	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	284	285	first strand
Strand 2	H	292	295	anti-parallel
Strand 3	H	298	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP6