Analysis of interatomic Contacts of Structural Units in PDB entry:
9UP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UP8 entry

There are 2 chains in PDB entry 9UP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 486
B
 ALA 2TYR 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9UP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
55 72Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
110 115Right-handed alpha
Helix 8
AA8
A
120 138Right-handed alpha
Helix 9
AA9
A
143 147Right-handed 310
Helix 10
AB1
A
160 162Right-handed 310
Helix 11
AB2
A
163 180Right-handed alpha
Helix 12
AB3
A
196 205Right-handed alpha
Helix 13
AB4
A
226 238Right-handed alpha
Helix 14
AB5
A
242 263Right-handed alpha
Helix 15
AB6
A
267 292Right-handed alpha
Helix 16
AB7
A
303 307Right-handed 310
Helix 17
AB8
A
309 321Right-handed alpha
Helix 18
AB9
A
327 339Right-handed alpha
Helix 19
AC1
A
344 355Right-handed alpha
Helix 20
AC2
A
357 365Right-handed alpha
Helix 21
AC3
A
383 396Right-handed alpha
Helix 22
AC4
A
402 409Right-handed 310
Helix 23
AC5
A
412 419Right-handed 310
Helix 24
AC6
A
425 442Right-handed alpha
Helix 25
AC7
A
444 448Right-handed 310
Helix 26
AC8
A
451 463Right-handed alpha
Helix 27
AC9
A
477 481Right-handed 310
Helix 28
AD1
B
13 28Right-handed alpha
Helix 29
AD2
B
55 72Right-handed alpha
Helix 30
AD3
B
76 85Right-handed alpha
Helix 31
AD4
B
85 99Right-handed alpha
Helix 32
AD5
B
102 104Right-handed 310
Helix 33
AD6
B
105 110Right-handed alpha
Helix 34
AD7
B
110 115Right-handed alpha
Helix 35
AD8
B
120 139Right-handed alpha
Helix 36
AD9
B
143 147Right-handed 310
Helix 37
AE1
B
160 181Right-handed alpha
Helix 38
AE2
B
196 205Right-handed alpha
Helix 39
AE3
B
226 238Right-handed alpha
Helix 40
AE4
B
242 263Right-handed alpha
Helix 41
AE5
B
267 291Right-handed alpha
Helix 42
AE6
B
303 307Right-handed 310
Helix 43
AE7
B
309 321Right-handed alpha
Helix 44
AE8
B
327 341Right-handed alpha
Helix 45
AE9
B
344 355Right-handed alpha
Helix 46
AF1
B
357 365Right-handed alpha
Helix 47
AF2
B
383 396Right-handed alpha
Helix 48
AF3
B
402 409Right-handed 310
Helix 49
AF4
B
412 419Right-handed 310
Helix 50
AF5
B
425 442Right-handed alpha
Helix 51
AF6
B
444 448Right-handed 310
Helix 52
AF7
B
451 463Right-handed alpha
Helix 53
AF8
B
477 481Right-handed 310
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There are 2 sheets in PDB entry 9UP8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
482 485parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
482 485parallel
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