Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UPC entry

There are 3 chains in PDB entry 9UPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 635CYS 981
B
 ILE 4SER 378
C
 PHE 19GLU 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9UPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
642 653Right-handed alpha
Helix 2
AA2
A
693 707Right-handed alpha
Helix 3
AA3
A
715 736Right-handed alpha
Helix 4
AA4
A
741 762Right-handed alpha
Helix 5
AA5
A
771 795Right-handed alpha
Helix 6
AA6
A
802 813Right-handed alpha
Helix 7
AA7
A
818 826Right-handed alpha
Helix 8
AA8
A
834 849Right-handed alpha
Helix 9
AA9
A
851 861Right-handed alpha
Helix 10
AB1
A
863 869Right-handed alpha
Helix 11
AB2
A
873 888Right-handed alpha
Helix 12
AB3
A
900 904Right-handed 310
Helix 13
AB4
A
912 921Right-handed alpha
Helix 14
AB5
A
922 924Right-handed 310
Helix 15
AB6
A
951 957Right-handed alpha
Helix 16
AB7
A
961 968Right-handed alpha
Helix 17
AB8
B
5 20Right-handed alpha
Helix 18
AB9
B
21 30Right-handed alpha
Helix 19
AC1
B
46 54Right-handed alpha
Helix 20
AC2
B
59 75Right-handed alpha
Helix 21
AC3
B
76 98Right-handed alpha
Helix 22
AC4
B
104 127Right-handed alpha
Helix 23
AC5
B
136 152Right-handed alpha
Helix 24
AC6
B
155 159Right-handed 310
Helix 25
AC7
B
163 167Right-handed 310
Helix 26
AC8
B
168 183Right-handed alpha
Helix 27
AC9
B
184 195Right-handed alpha
Helix 28
AD1
B
200 204Right-handed 310
Helix 29
AD2
B
206 223Right-handed alpha
Helix 30
AD3
B
225 240Right-handed alpha
Helix 31
AD4
B
241 243Right-handed 310
Helix 32
AD5
B
244 262Right-handed alpha
Helix 33
AD6
B
267 274Right-handed alpha
Helix 34
AD7
B
277 287Right-handed alpha
Helix 35
AD8
B
290 301Right-handed alpha
Helix 36
AD9
B
301 309Right-handed alpha
Helix 37
AE1
B
316 330Right-handed alpha
Helix 38
AE2
B
339 349Right-handed alpha
Helix 39
AE3
B
356 371Right-handed alpha
Helix 40
AE4
C
50 62Right-handed alpha
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There are 2 sheets in PDB entry 9UPC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 897first strand
Strand 2
A
934 935anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
C
39 40anti-parallel
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