Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UPE entry

There are 2 chains in PDB entry 9UPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11MET 661
A
 PHE 663VAL 813
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 9UPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
37 40Right-handed 310
Helix 3
AA3
A
41 67Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
97 103Right-handed alpha
Helix 6
AA6
A
104 106Right-handed 310
Helix 7
AA7
A
108 112Right-handed 310
Helix 8
AA8
A
124 140Right-handed alpha
Helix 9
AA9
A
241 246Right-handed 310
Helix 10
AB1
A
251 256Right-handed alpha
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
279 306Right-handed alpha
Helix 13
AB4
A
310 314Right-handed 310
Helix 14
AB5
A
327 332Right-handed alpha
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
342 351Right-handed alpha
Helix 17
AB8
A
370 378Right-handed alpha
Helix 18
AB9
A
380 395Right-handed alpha
Helix 19
AC1
A
403 410Right-handed alpha
Helix 20
AC2
A
422 431Right-handed alpha
Helix 21
AC3
A
438 447Right-handed alpha
Helix 22
AC4
A
478 489Right-handed alpha
Helix 23
AC5
A
491 495Right-handed 310
Helix 24
AC6
A
498 504Right-handed 310
Helix 25
AC7
A
508 535Right-handed alpha
Helix 26
AC8
A
557 575Right-handed alpha
Helix 27
AC9
A
595 613Right-handed alpha
Helix 28
AD1
A
615 619Right-handed 310
Helix 29
AD2
A
631 639Right-handed alpha
Helix 30
AD3
A
640 642Right-handed 310
Helix 31
AD4
A
658 667Right-handed alpha
Helix 32
AD5
A
677 685Right-handed alpha
Helix 33
AD6
A
686 690Right-handed 310
Helix 34
AD7
A
696 706Right-handed alpha
Helix 35
AD8
A
711 717Right-handed alpha
Helix 36
AD9
A
717 730Right-handed alpha
Helix 37
AE1
A
740 749Right-handed alpha
Helix 38
AE2
A
759 775Right-handed alpha
Helix 39
AE3
A
776 790Right-handed alpha
Helix 40
AE4
A
795 807Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9UPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 190first strand
Strand 2
A
211 221anti-parallel
Strand 3
A
228 238anti-parallel
Strand 4
A
144 149parallel
Strand 5
A
72 75parallel
Strand 6
A
317 319parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
164 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
583 587parallel
Strand 3
A
622 626parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
671 672parallel
Strand 3
A
691 692parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il