Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UPF entry

There are 4 chains in PDB entry 9UPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 645	LEU 1084
A	LEU 130	LYS 580
D	PRO 25	LYS 474
C	LEU 130	LYS 580

There are 77 helices in PDB entry 9UPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	653	680	Right-handed alpha
Helix 2	AA2	B	687	708	Right-handed alpha
Helix 3	AA3	B	724	734	Right-handed alpha
Helix 4	AA4	B	735	746	Right-handed alpha
Helix 5	AA5	B	758	768	Right-handed 310
Helix 6	AA6	B	769	783	Right-handed alpha
Helix 7	AA7	B	786	816	Right-handed alpha
Helix 8	AA8	B	830	844	Right-handed alpha
Helix 9	AA9	B	854	907	Right-handed alpha
Helix 10	AB1	B	910	929	Right-handed alpha
Helix 11	AB2	B	933	940	Right-handed alpha
Helix 12	AB3	B	941	959	Right-handed alpha
Helix 13	AB4	B	967	978	Right-handed alpha
Helix 14	AB5	B	1029	1034	Right-handed alpha
Helix 15	AB6	B	1059	1069	Right-handed alpha
Helix 16	AB7	B	1069	1084	Right-handed alpha
Helix 17	AB8	A	137	164	Right-handed alpha
Helix 18	AB9	A	164	171	Right-handed alpha
Helix 19	AC1	A	171	196	Right-handed alpha
Helix 20	AC2	A	207	218	Right-handed alpha
Helix 21	AC3	A	218	229	Right-handed alpha
Helix 22	AC4	A	243	252	Right-handed 310
Helix 23	AC5	A	253	267	Right-handed alpha
Helix 24	AC6	A	269	301	Right-handed alpha
Helix 25	AC7	A	319	336	Right-handed alpha
Helix 26	AC8	A	346	363	Right-handed alpha
Helix 27	AC9	A	363	400	Right-handed alpha
Helix 28	AD1	A	402	419	Right-handed alpha
Helix 29	AD2	A	424	429	Right-handed alpha
Helix 30	AD3	A	433	445	Right-handed alpha
Helix 31	AD4	A	445	452	Right-handed alpha
Helix 32	AD5	A	460	470	Right-handed alpha
Helix 33	AD6	A	520	525	Right-handed alpha
Helix 34	AD7	A	553	563	Right-handed alpha
Helix 35	AD8	A	563	580	Right-handed alpha
Helix 36	AD9	D	31	58	Right-handed alpha
Helix 37	AE1	D	58	65	Right-handed alpha
Helix 38	AE2	D	65	89	Right-handed alpha
Helix 39	AE3	D	101	112	Right-handed alpha
Helix 40	AE4	D	112	122	Right-handed alpha
Helix 41	AE5	D	125	133	Right-handed alpha
Helix 42	AE6	D	136	145	Right-handed 310
Helix 43	AE7	D	146	161	Right-handed alpha
Helix 44	AE8	D	163	195	Right-handed alpha
Helix 45	AE9	D	209	212	Right-handed 310
Helix 46	AF1	D	213	230	Right-handed alpha
Helix 47	AF2	D	240	279	Right-handed alpha
Helix 48	AF3	D	282	294	Right-handed alpha
Helix 49	AF4	D	296	313	Right-handed alpha
Helix 50	AF5	D	319	326	Right-handed alpha
Helix 51	AF6	D	327	339	Right-handed alpha
Helix 52	AF7	D	339	346	Right-handed alpha
Helix 53	AF8	D	355	364	Right-handed alpha
Helix 54	AF9	D	414	419	Right-handed alpha
Helix 55	AG1	D	446	457	Right-handed alpha
Helix 56	AG2	D	457	474	Right-handed alpha
Helix 57	AG3	C	137	164	Right-handed alpha
Helix 58	AG4	C	164	171	Right-handed alpha
Helix 59	AG5	C	171	195	Right-handed alpha
Helix 60	AG6	C	207	216	Right-handed alpha
Helix 61	AG7	C	218	228	Right-handed alpha
Helix 62	AG8	C	246	252	Right-handed 310
Helix 63	AG9	C	253	267	Right-handed alpha
Helix 64	AH1	C	269	301	Right-handed alpha
Helix 65	AH2	C	314	318	Right-handed 310
Helix 66	AH3	C	319	336	Right-handed alpha
Helix 67	AH4	C	346	379	Right-handed alpha
Helix 68	AH5	C	379	400	Right-handed alpha
Helix 69	AH6	C	402	420	Right-handed alpha
Helix 70	AH7	C	424	429	Right-handed alpha
Helix 71	AH8	C	433	445	Right-handed alpha
Helix 72	AH9	C	445	452	Right-handed alpha
Helix 73	AI1	C	452	459	Right-handed alpha
Helix 74	AI2	C	462	470	Right-handed alpha
Helix 75	AI3	C	520	525	Right-handed alpha
Helix 76	AI4	C	553	563	Right-handed alpha
Helix 77	AI5	C	565	580	Right-handed alpha

There are 12 sheets in PDB entry 9UPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	717	first strand
Strand 2	B	720	722	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	983	first strand
Strand 2	B	1052	1058	anti-parallel
Strand 3	B	998	1004	anti-parallel
Strand 4	B	1027	1028	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	988	990	first strand
Strand 2	B	1045	1048	anti-parallel
Strand 3	B	1007	1010	anti-parallel
Strand 4	B	1018	1022	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	203	204	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	475	first strand
Strand 2	A	540	552	anti-parallel
Strand 3	A	490	502	anti-parallel
Strand 4	A	509	513	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	540	552	anti-parallel
Strand 3	A	490	502	anti-parallel
Strand 4	A	518	519	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	97	98	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	440	444	anti-parallel
Strand 3	D	387	390	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	376	first strand
Strand 2	D	433	436	anti-parallel
Strand 3	D	393	396	anti-parallel
Strand 4	D	403	407	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	C	203	204	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	475	first strand
Strand 2	C	546	552	anti-parallel
Strand 3	C	490	496	anti-parallel
Strand 4	C	518	519	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	482	first strand
Strand 2	C	539	542	anti-parallel
Strand 3	C	499	502	anti-parallel
Strand 4	C	509	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPF