Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UPG entry

There are 5 chains in PDB entry 9UPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 130	TYR 648
D	PRO 25	ASP 544
C	LEU 130	ASP 647
B	ALA 557	MET 1119
H	MET 1	LYS 149

There are 86 helices in PDB entry 9UPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	164	Right-handed alpha
Helix 2	AA2	A	164	171	Right-handed alpha
Helix 3	AA3	A	171	194	Right-handed alpha
Helix 4	AA4	A	207	217	Right-handed alpha
Helix 5	AA5	A	218	228	Right-handed alpha
Helix 6	AA6	A	242	252	Right-handed 310
Helix 7	AA7	A	253	267	Right-handed alpha
Helix 8	AA8	A	269	301	Right-handed alpha
Helix 9	AA9	A	319	336	Right-handed alpha
Helix 10	AB1	A	346	399	Right-handed alpha
Helix 11	AB2	A	402	419	Right-handed alpha
Helix 12	AB3	A	424	429	Right-handed alpha
Helix 13	AB4	A	433	450	Right-handed alpha
Helix 14	AB5	A	459	470	Right-handed alpha
Helix 15	AB6	A	520	525	Right-handed alpha
Helix 16	AB7	A	553	560	Right-handed alpha
Helix 17	AB8	A	563	582	Right-handed alpha
Helix 18	AB9	A	596	648	Right-handed alpha
Helix 19	AC1	D	31	41	Right-handed alpha
Helix 20	AC2	D	41	58	Right-handed alpha
Helix 21	AC3	D	58	65	Right-handed alpha
Helix 22	AC4	D	65	88	Right-handed alpha
Helix 23	AC5	D	101	112	Right-handed alpha
Helix 24	AC6	D	112	122	Right-handed alpha
Helix 25	AC7	D	128	133	Right-handed alpha
Helix 26	AC8	D	136	145	Right-handed 310
Helix 27	AC9	D	146	161	Right-handed alpha
Helix 28	AD1	D	163	195	Right-handed alpha
Helix 29	AD2	D	213	230	Right-handed alpha
Helix 30	AD3	D	240	280	Right-handed alpha
Helix 31	AD4	D	283	293	Right-handed alpha
Helix 32	AD5	D	296	314	Right-handed alpha
Helix 33	AD6	D	318	324	Right-handed alpha
Helix 34	AD7	D	327	345	Right-handed alpha
Helix 35	AD8	D	353	363	Right-handed alpha
Helix 36	AD9	D	447	455	Right-handed alpha
Helix 37	AE1	D	457	475	Right-handed alpha
Helix 38	AE2	D	479	539	Right-handed alpha
Helix 39	AE3	C	137	164	Right-handed alpha
Helix 40	AE4	C	164	171	Right-handed alpha
Helix 41	AE5	C	171	195	Right-handed alpha
Helix 42	AE6	C	207	217	Right-handed alpha
Helix 43	AE7	C	218	229	Right-handed alpha
Helix 44	AE8	C	242	252	Right-handed 310
Helix 45	AE9	C	253	267	Right-handed alpha
Helix 46	AF1	C	269	301	Right-handed alpha
Helix 47	AF2	C	314	319	Right-handed alpha
Helix 48	AF3	C	319	336	Right-handed alpha
Helix 49	AF4	C	346	379	Right-handed alpha
Helix 50	AF5	C	379	399	Right-handed alpha
Helix 51	AF6	C	402	419	Right-handed alpha
Helix 52	AF7	C	424	430	Right-handed alpha
Helix 53	AF8	C	433	451	Right-handed alpha
Helix 54	AF9	C	459	470	Right-handed alpha
Helix 55	AG1	C	520	525	Right-handed alpha
Helix 56	AG2	C	553	560	Right-handed alpha
Helix 57	AG3	C	563	582	Right-handed alpha
Helix 58	AG4	C	585	593	Right-handed alpha
Helix 59	AG5	C	596	647	Right-handed alpha
Helix 60	AG6	B	558	588	Right-handed alpha
Helix 61	AG7	B	588	596	Right-handed alpha
Helix 62	AG8	B	653	680	Right-handed alpha
Helix 63	AG9	B	684	708	Right-handed alpha
Helix 64	AH1	B	724	734	Right-handed alpha
Helix 65	AH2	B	735	745	Right-handed alpha
Helix 66	AH3	B	758	767	Right-handed 310
Helix 67	AH4	B	768	783	Right-handed alpha
Helix 68	AH5	B	786	817	Right-handed alpha
Helix 69	AH6	B	830	844	Right-handed alpha
Helix 70	AH7	B	854	907	Right-handed alpha
Helix 71	AH8	B	910	929	Right-handed alpha
Helix 72	AH9	B	933	938	Right-handed alpha
Helix 73	AI1	B	941	959	Right-handed alpha
Helix 74	AI2	B	960	964	Right-handed 310
Helix 75	AI3	B	967	978	Right-handed alpha
Helix 76	AI4	B	1029	1034	Right-handed 310
Helix 77	AI5	B	1059	1067	Right-handed alpha
Helix 78	AI6	B	1069	1088	Right-handed alpha
Helix 79	AI7	B	1106	1119	Right-handed alpha
Helix 80	AI8	H	6	21	Right-handed alpha
Helix 81	AI9	H	29	41	Right-handed alpha
Helix 82	AJ1	H	45	57	Right-handed alpha
Helix 83	AJ2	H	66	94	Right-handed alpha
Helix 84	AJ3	H	102	114	Right-handed alpha
Helix 85	AJ4	H	118	130	Right-handed alpha
Helix 86	AJ5	H	138	148	Right-handed alpha

There are 13 sheets in PDB entry 9UPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	203	204	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	475	first strand
Strand 2	A	546	552	anti-parallel
Strand 3	A	490	496	anti-parallel
Strand 4	A	518	519	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	539	542	anti-parallel
Strand 3	A	499	502	anti-parallel
Strand 4	A	509	513	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	97	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	433	446	anti-parallel
Strand 3	D	384	396	anti-parallel
Strand 4	D	403	407	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	376	first strand
Strand 2	D	433	446	anti-parallel
Strand 3	D	384	396	anti-parallel
Strand 4	D	412	413	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	C	203	204	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	475	first strand
Strand 2	C	546	552	anti-parallel
Strand 3	C	490	496	anti-parallel
Strand 4	C	518	519	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	482	first strand
Strand 2	C	539	542	anti-parallel
Strand 3	C	499	502	anti-parallel
Strand 4	C	509	513	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	717	first strand
Strand 2	B	720	722	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	983	first strand
Strand 2	B	1045	1058	anti-parallel
Strand 3	B	998	1010	anti-parallel
Strand 4	B	1018	1022	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	988	990	first strand
Strand 2	B	1045	1058	anti-parallel
Strand 3	B	998	1010	anti-parallel
Strand 4	B	1027	1028	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	64	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPG