Analysis of interatomic Contacts of Structural Units in PDB entry:
9UPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UPR entry

There are 4 chains in PDB entry 9UPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLU 213
B
 GLU 1LEU 199
E
 LEU 4SER 121
F
 GLN 23LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9UPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 128Right-handed alpha
Helix 2
AA2
A
183 189Right-handed alpha
Helix 3
AA3
B
86 90Right-handed 310
Helix 4
AA4
B
164 168Right-handed 310
Helix 5
AA5
F
294 303Right-handed alpha
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There are 14 sheets in PDB entry 9UPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
102 105parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
159 163anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
205 209anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
115 119parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 52anti-parallel
Strand 6
B
54 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
115 119parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
110 111anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
186 189anti-parallel
Strand 4
B
179 180anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
17 22anti-parallel
Strand 3
E
77 83anti-parallel
Strand 4
E
67 72anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
119 120parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
92 97anti-parallel
Strand 5
E
116 117anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 30first strand
Strand 2
F
61 66anti-parallel
Strand 3
F
264 269anti-parallel
Strand 4
F
90 96anti-parallel
Strand 5
F
187 197anti-parallel
Strand 6
F
200 210anti-parallel
Strand 7
F
222 229anti-parallel
Strand 8
F
36 37parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 55first strand
Strand 2
F
271 279anti-parallel
Strand 3
F
285 290anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 85first strand
Strand 2
F
237 241anti-parallel
Strand 3
F
103 107anti-parallel
Strand 4
F
116 122anti-parallel
Strand 5
F
125 135anti-parallel
Strand 6
F
160 172anti-parallel
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