Analysis of interatomic Contacts of Structural Units in PDB entry:
9URD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9URD entry

There is 1 chain in PDB entry 9URD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37GLY 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9URD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 51Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
78 93Right-handed alpha
Helix 4
AA4
A
93 102Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
154 162Right-handed alpha
Helix 8
AA8
A
162 178Right-handed alpha
Helix 9
AA9
A
181 187Right-handed 310
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
193 201Right-handed 310
Helix 12
AB3
A
202 209Right-handed alpha
Helix 13
AB4
A
214 218Right-handed 310
Helix 14
AB5
A
219 233Right-handed alpha
Helix 15
AB6
A
235 245Right-handed alpha
Helix 16
AB7
A
246 270Right-handed alpha
Helix 17
AB8
A
272 289Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9URD.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
114 117parallel
Strand 3
A
137 142parallel
Strand 4
A
129 134anti-parallel
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