Analysis of interatomic Contacts of Structural Units in PDB entry:
9URF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9URF entry

There are 2 chains in PDB entry 9URF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 35	ASN 779
B	SER 35	THR 564

There are 57 helices in PDB entry 9URF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	50	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	94	109	Right-handed alpha
Helix 5	AA5	A	131	137	Right-handed alpha
Helix 6	AA6	A	140	158	Right-handed alpha
Helix 7	AA7	A	176	182	Right-handed 310
Helix 8	AA8	A	186	203	Right-handed alpha
Helix 9	AA9	A	221	229	Right-handed 310
Helix 10	AB1	A	237	245	Right-handed alpha
Helix 11	AB2	A	246	255	Right-handed alpha
Helix 12	AB3	A	275	280	Right-handed alpha
Helix 13	AB4	A	298	307	Right-handed alpha
Helix 14	AB5	A	310	322	Right-handed alpha
Helix 15	AB6	A	330	342	Right-handed alpha
Helix 16	AB7	A	346	364	Right-handed alpha
Helix 17	AB8	A	377	383	Right-handed alpha
Helix 18	AB9	A	385	400	Right-handed alpha
Helix 19	AC1	A	448	452	Right-handed 310
Helix 20	AC2	A	454	463	Right-handed alpha
Helix 21	AC3	A	480	488	Right-handed alpha
Helix 22	AC4	A	500	514	Right-handed alpha
Helix 23	AC5	A	525	529	Right-handed 310
Helix 24	AC6	A	541	554	Right-handed alpha
Helix 25	AC7	A	570	577	Right-handed alpha
Helix 26	AC8	A	589	599	Right-handed alpha
Helix 27	AC9	A	615	619	Right-handed 310
Helix 28	AD1	A	740	745	Right-handed 310
Helix 29	AD2	B	38	50	Right-handed alpha
Helix 30	AD3	B	51	59	Right-handed alpha
Helix 31	AD4	B	71	74	Right-handed 310
Helix 32	AD5	B	75	83	Right-handed alpha
Helix 33	AD6	B	94	109	Right-handed alpha
Helix 34	AD7	B	131	137	Right-handed alpha
Helix 35	AD8	B	140	158	Right-handed alpha
Helix 36	AD9	B	176	182	Right-handed 310
Helix 37	AE1	B	186	203	Right-handed alpha
Helix 38	AE2	B	221	229	Right-handed 310
Helix 39	AE3	B	237	245	Right-handed alpha
Helix 40	AE4	B	246	255	Right-handed alpha
Helix 41	AE5	B	275	280	Right-handed alpha
Helix 42	AE6	B	301	307	Right-handed alpha
Helix 43	AE7	B	310	322	Right-handed alpha
Helix 44	AE8	B	330	342	Right-handed alpha
Helix 45	AE9	B	346	364	Right-handed alpha
Helix 46	AF1	B	377	383	Right-handed alpha
Helix 47	AF2	B	385	400	Right-handed alpha
Helix 48	AF3	B	448	452	Right-handed 310
Helix 49	AF4	B	454	464	Right-handed alpha
Helix 50	AF5	B	480	488	Right-handed alpha
Helix 51	AF6	B	500	514	Right-handed alpha
Helix 52	AF7	B	525	529	Right-handed 310
Helix 53	AF8	B	541	554	Right-handed alpha
Helix 54	AF9	B	570	577	Right-handed alpha
Helix 55	AG1	B	589	599	Right-handed alpha
Helix 56	AG2	B	615	619	Right-handed 310
Helix 57	AG3	B	740	745	Right-handed 310

There are 18 sheets in PDB entry 9URF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	326	327	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	116	119	parallel
Strand 3	A	162	163	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	259	262	parallel
Strand 3	A	292	295	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	405	first strand
Strand 2	A	579	584	anti-parallel
Strand 3	A	558	563	parallel
Strand 4	A	517	523	parallel
Strand 5	A	424	429	parallel
Strand 6	A	467	472	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	A	683	691	anti-parallel
Strand 3	A	671	672	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	A	683	691	anti-parallel
Strand 3	A	732	739	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	677	first strand
Strand 2	A	771	778	parallel
Strand 3	A	758	765	anti-parallel
Strand 4	A	697	707	anti-parallel
Strand 5	A	718	727	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	747	first strand
Strand 2	A	753	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	326	327	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	116	119	parallel
Strand 3	B	162	163	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	259	262	parallel
Strand 3	B	292	294	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	405	first strand
Strand 2	B	579	584	anti-parallel
Strand 3	B	558	563	parallel
Strand 4	B	517	523	parallel
Strand 5	B	424	429	parallel
Strand 6	B	467	472	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	683	691	anti-parallel
Strand 3	B	671	672	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	683	691	anti-parallel
Strand 3	B	732	739	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	677	first strand
Strand 2	B	771	778	parallel
Strand 3	B	758	765	anti-parallel
Strand 4	B	697	707	anti-parallel
Strand 5	B	718	727	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	747	first strand
Strand 2	B	753	754	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9URF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9URF