Analysis of interatomic Contacts of Structural Units in PDB entry:
9URI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9URI entry

There are 4 chains in PDB entry 9URI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	PRO 687
B	GLU 4	PRO 687
C	GLU 4	PRO 687
D	GLU 4	PRO 687

There are 88 helices in PDB entry 9URI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	31	63	Right-handed alpha
Helix 3	AA3	A	74	105	Right-handed alpha
Helix 4	AA4	A	117	130	Right-handed alpha
Helix 5	AA5	A	145	150	Right-handed alpha
Helix 6	AA6	A	199	206	Right-handed alpha
Helix 7	AA7	A	206	212	Right-handed alpha
Helix 8	AA8	A	269	280	Right-handed alpha
Helix 9	AA9	A	296	303	Right-handed 310
Helix 10	AB1	A	308	312	Right-handed 310
Helix 11	AB2	A	321	326	Right-handed 310
Helix 12	AB3	A	331	339	Right-handed alpha
Helix 13	AB4	A	350	363	Right-handed alpha
Helix 14	AB5	A	380	393	Right-handed alpha
Helix 15	AB6	A	416	422	Right-handed alpha
Helix 16	AB7	A	477	493	Right-handed alpha
Helix 17	AB8	A	509	527	Right-handed alpha
Helix 18	AB9	A	542	556	Right-handed alpha
Helix 19	AC1	A	600	603	Right-handed 310
Helix 20	AC2	A	614	620	Right-handed alpha
Helix 21	AC3	A	630	646	Right-handed alpha
Helix 22	AC4	A	672	685	Right-handed alpha
Helix 23	AC5	B	9	23	Right-handed alpha
Helix 24	AC6	B	31	63	Right-handed alpha
Helix 25	AC7	B	74	105	Right-handed alpha
Helix 26	AC8	B	117	130	Right-handed alpha
Helix 27	AC9	B	145	150	Right-handed alpha
Helix 28	AD1	B	199	206	Right-handed alpha
Helix 29	AD2	B	206	212	Right-handed alpha
Helix 30	AD3	B	269	280	Right-handed alpha
Helix 31	AD4	B	296	303	Right-handed 310
Helix 32	AD5	B	308	312	Right-handed 310
Helix 33	AD6	B	321	326	Right-handed 310
Helix 34	AD7	B	331	339	Right-handed alpha
Helix 35	AD8	B	350	363	Right-handed alpha
Helix 36	AD9	B	380	393	Right-handed alpha
Helix 37	AE1	B	416	422	Right-handed alpha
Helix 38	AE2	B	477	493	Right-handed alpha
Helix 39	AE3	B	509	527	Right-handed alpha
Helix 40	AE4	B	542	556	Right-handed alpha
Helix 41	AE5	B	600	603	Right-handed 310
Helix 42	AE6	B	614	620	Right-handed alpha
Helix 43	AE7	B	630	646	Right-handed alpha
Helix 44	AE8	B	672	685	Right-handed alpha
Helix 45	AE9	C	9	23	Right-handed alpha
Helix 46	AF1	C	31	63	Right-handed alpha
Helix 47	AF2	C	74	105	Right-handed alpha
Helix 48	AF3	C	117	130	Right-handed alpha
Helix 49	AF4	C	145	150	Right-handed alpha
Helix 50	AF5	C	199	206	Right-handed alpha
Helix 51	AF6	C	206	212	Right-handed alpha
Helix 52	AF7	C	269	280	Right-handed alpha
Helix 53	AF8	C	296	303	Right-handed 310
Helix 54	AF9	C	308	312	Right-handed 310
Helix 55	AG1	C	321	326	Right-handed 310
Helix 56	AG2	C	331	339	Right-handed alpha
Helix 57	AG3	C	350	363	Right-handed alpha
Helix 58	AG4	C	380	393	Right-handed alpha
Helix 59	AG5	C	416	422	Right-handed alpha
Helix 60	AG6	C	477	493	Right-handed alpha
Helix 61	AG7	C	509	527	Right-handed alpha
Helix 62	AG8	C	542	556	Right-handed alpha
Helix 63	AG9	C	600	603	Right-handed 310
Helix 64	AH1	C	614	620	Right-handed alpha
Helix 65	AH2	C	630	646	Right-handed alpha
Helix 66	AH3	C	672	685	Right-handed alpha
Helix 67	AH4	D	9	23	Right-handed alpha
Helix 68	AH5	D	31	63	Right-handed alpha
Helix 69	AH6	D	74	105	Right-handed alpha
Helix 70	AH7	D	117	130	Right-handed alpha
Helix 71	AH8	D	145	150	Right-handed alpha
Helix 72	AH9	D	199	206	Right-handed alpha
Helix 73	AI1	D	206	212	Right-handed alpha
Helix 74	AI2	D	269	280	Right-handed alpha
Helix 75	AI3	D	296	303	Right-handed 310
Helix 76	AI4	D	308	312	Right-handed 310
Helix 77	AI5	D	321	326	Right-handed 310
Helix 78	AI6	D	331	339	Right-handed alpha
Helix 79	AI7	D	350	363	Right-handed alpha
Helix 80	AI8	D	380	393	Right-handed alpha
Helix 81	AI9	D	416	422	Right-handed alpha
Helix 82	AJ1	D	477	493	Right-handed alpha
Helix 83	AJ2	D	509	527	Right-handed alpha
Helix 84	AJ3	D	542	556	Right-handed alpha
Helix 85	AJ4	D	600	603	Right-handed 310
Helix 86	AJ5	D	614	620	Right-handed alpha
Helix 87	AJ6	D	630	646	Right-handed alpha
Helix 88	AJ7	D	672	685	Right-handed alpha

There are 20 sheets in PDB entry 9URI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	194	198	parallel
Strand 3	A	182	184	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	154	163	anti-parallel
Strand 4	A	219	227	anti-parallel
Strand 5	A	262	264	anti-parallel
Strand 6	A	288	290	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	468	475	anti-parallel
Strand 3	A	448	456	anti-parallel
Strand 4	A	437	445	anti-parallel
Strand 5	A	366	373	anti-parallel
Strand 6	A	395	401	parallel
Strand 7	A	424	428	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	468	475	anti-parallel
Strand 3	A	590	591	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	624	627	anti-parallel
Strand 3	A	605	609	anti-parallel
Strand 4	A	594	598	anti-parallel
Strand 5	A	533	536	anti-parallel
Strand 6	A	559	561	parallel
Strand 7	A	580	585	parallel
Strand 8	A	651	653	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	194	198	parallel
Strand 3	B	182	184	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	166	173	anti-parallel
Strand 3	B	154	163	anti-parallel
Strand 4	B	219	227	anti-parallel
Strand 5	B	262	264	anti-parallel
Strand 6	B	288	290	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	468	475	anti-parallel
Strand 3	B	448	456	anti-parallel
Strand 4	B	437	445	anti-parallel
Strand 5	B	366	373	anti-parallel
Strand 6	B	395	401	parallel
Strand 7	B	424	428	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	468	475	anti-parallel
Strand 3	B	590	591	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	624	627	anti-parallel
Strand 3	B	605	609	anti-parallel
Strand 4	B	594	598	anti-parallel
Strand 5	B	533	536	anti-parallel
Strand 6	B	559	561	parallel
Strand 7	B	580	585	parallel
Strand 8	B	651	653	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	194	198	parallel
Strand 3	C	182	184	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	166	173	anti-parallel
Strand 3	C	154	163	anti-parallel
Strand 4	C	219	227	anti-parallel
Strand 5	C	262	264	anti-parallel
Strand 6	C	288	290	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	468	475	anti-parallel
Strand 3	C	448	456	anti-parallel
Strand 4	C	437	445	anti-parallel
Strand 5	C	366	373	anti-parallel
Strand 6	C	395	401	parallel
Strand 7	C	424	428	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	468	475	anti-parallel
Strand 3	C	590	591	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	504	505	first strand
Strand 2	C	624	627	anti-parallel
Strand 3	C	605	609	anti-parallel
Strand 4	C	594	598	anti-parallel
Strand 5	C	533	536	anti-parallel
Strand 6	C	559	561	parallel
Strand 7	C	580	585	parallel
Strand 8	C	651	653	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	194	198	parallel
Strand 3	D	182	184	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	166	173	anti-parallel
Strand 3	D	154	163	anti-parallel
Strand 4	D	219	227	anti-parallel
Strand 5	D	262	264	anti-parallel
Strand 6	D	288	290	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	345	first strand
Strand 2	D	468	475	anti-parallel
Strand 3	D	448	456	anti-parallel
Strand 4	D	437	445	anti-parallel
Strand 5	D	366	373	anti-parallel
Strand 6	D	395	401	parallel
Strand 7	D	424	428	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	345	first strand
Strand 2	D	468	475	anti-parallel
Strand 3	D	590	591	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	624	627	anti-parallel
Strand 3	D	605	609	anti-parallel
Strand 4	D	594	598	anti-parallel
Strand 5	D	533	536	anti-parallel
Strand 6	D	559	561	parallel
Strand 7	D	580	585	parallel
Strand 8	D	651	653	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9URI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9URI