Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UT4 entry

There are 2 chains in PDB entry 9UT4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 409	GLY 888
C	ALA 4	ALA 750

There are 48 helices in PDB entry 9UT4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	409	417	Right-handed alpha
Helix 2	AA2	B	427	438	Right-handed alpha
Helix 3	AA3	B	457	472	Right-handed alpha
Helix 4	AA4	B	473	475	Right-handed 310
Helix 5	AA5	B	500	509	Right-handed alpha
Helix 6	AA6	B	520	525	Right-handed alpha
Helix 7	AA7	B	554	560	Right-handed alpha
Helix 8	AA8	B	565	576	Right-handed alpha
Helix 9	AA9	B	578	590	Right-handed alpha
Helix 10	AB1	B	603	608	Right-handed alpha
Helix 11	AB2	B	638	661	Right-handed alpha
Helix 12	AB3	B	776	794	Right-handed alpha
Helix 13	AB4	B	794	802	Right-handed alpha
Helix 14	AB5	B	813	817	Right-handed 310
Helix 15	AB6	B	852	859	Right-handed alpha
Helix 16	AB7	B	860	866	Right-handed 310
Helix 17	AB8	C	57	65	Right-handed alpha
Helix 18	AB9	C	70	81	Right-handed alpha
Helix 19	AC1	C	89	93	Right-handed 310
Helix 20	AC2	C	94	113	Right-handed alpha
Helix 21	AC3	C	161	172	Right-handed alpha
Helix 22	AC4	C	176	188	Right-handed alpha
Helix 23	AC5	C	189	195	Right-handed alpha
Helix 24	AC6	C	225	229	Right-handed alpha
Helix 25	AC7	C	264	266	Right-handed 310
Helix 26	AC8	C	267	283	Right-handed alpha
Helix 27	AC9	C	297	301	Right-handed 310
Helix 28	AD1	C	329	344	Right-handed alpha
Helix 29	AD2	C	351	356	Right-handed 310
Helix 30	AD3	C	358	360	Right-handed 310
Helix 31	AD4	C	361	371	Right-handed alpha
Helix 32	AD5	C	374	383	Right-handed alpha
Helix 33	AD6	C	412	425	Right-handed alpha
Helix 34	AD7	C	426	429	Right-handed 310
Helix 35	AD8	C	431	433	Right-handed 310
Helix 36	AD9	C	434	448	Right-handed alpha
Helix 37	AE1	C	451	469	Right-handed alpha
Helix 38	AE2	C	469	494	Right-handed alpha
Helix 39	AE3	C	516	542	Right-handed alpha
Helix 40	AE4	C	588	606	Right-handed alpha
Helix 41	AE5	C	607	611	Right-handed 310
Helix 42	AE6	C	613	638	Right-handed alpha
Helix 43	AE7	C	642	647	Right-handed alpha
Helix 44	AE8	C	660	673	Right-handed 310
Helix 45	AE9	C	695	697	Right-handed 310
Helix 46	AF1	C	707	731	Right-handed alpha
Helix 47	AF2	C	740	745	Right-handed alpha
Helix 48	AF3	C	746	750	Right-handed 310

There are 10 sheets in PDB entry 9UT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	426	first strand
Strand 2	B	880	886	anti-parallel
Strand 3	B	772	774	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	456	first strand
Strand 2	B	545	552	anti-parallel
Strand 3	B	535	539	anti-parallel
Strand 4	B	613	615	anti-parallel
Strand 5	B	821	823	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	632	first strand
Strand 2	B	759	767	anti-parallel
Strand 3	B	674	678	anti-parallel
Strand 4	B	840	843	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	56	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	C	7	22	anti-parallel
Strand 4	C	122	126	anti-parallel
Strand 5	C	133	138	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	196	202	anti-parallel
Strand 4	C	149	157	anti-parallel
Strand 5	C	258	262	parallel
Strand 6	C	320	323	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	237	first strand
Strand 2	C	246	253	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	311	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	560	563	anti-parallel
Strand 3	C	569	572	anti-parallel
Strand 4	C	579	582	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	501	first strand
Strand 2	C	505	510	anti-parallel
Strand 3	C	405	409	anti-parallel
Strand 4	C	553	558	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	650	first strand
Strand 2	C	677	682	anti-parallel
Strand 3	C	690	693	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UT4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT4