Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UT8 entry

There are 2 chains in PDB entry 9UT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 26	GLY 833
B	LEU 23	ASN 824

There are 59 helices in PDB entry 9UT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	85	Right-handed alpha
Helix 2	AA2	A	108	115	Right-handed alpha
Helix 3	AA3	A	143	155	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed 310
Helix 5	AA5	A	186	201	Right-handed alpha
Helix 6	AA6	A	213	229	Right-handed alpha
Helix 7	AA7	A	250	265	Right-handed alpha
Helix 8	AA8	A	280	291	Right-handed alpha
Helix 9	AA9	A	307	312	Right-handed alpha
Helix 10	AB1	A	313	320	Right-handed 310
Helix 11	AB2	A	335	341	Right-handed alpha
Helix 12	AB3	A	368	373	Right-handed alpha
Helix 13	AB4	A	373	380	Right-handed alpha
Helix 14	AB5	A	384	404	Right-handed alpha
Helix 15	AB6	A	416	425	Right-handed alpha
Helix 16	AB7	A	563	590	Right-handed alpha
Helix 17	AB8	A	593	598	Right-handed alpha
Helix 18	AB9	A	601	617	Right-handed alpha
Helix 19	AC1	A	618	622	Right-handed 310
Helix 20	AC2	A	626	665	Right-handed alpha
Helix 21	AC3	A	668	676	Right-handed alpha
Helix 22	AC4	A	677	700	Right-handed alpha
Helix 23	AC5	A	720	723	Right-handed 310
Helix 24	AC6	A	724	729	Right-handed alpha
Helix 25	AC7	A	733	749	Right-handed alpha
Helix 26	AC8	A	758	781	Right-handed alpha
Helix 27	AC9	A	787	805	Right-handed alpha
Helix 28	AD1	A	808	818	Right-handed alpha
Helix 29	AD2	A	823	833	Right-handed alpha
Helix 30	AD3	B	24	28	Right-handed 310
Helix 31	AD4	B	66	86	Right-handed alpha
Helix 32	AD5	B	105	117	Right-handed alpha
Helix 33	AD6	B	146	160	Right-handed alpha
Helix 34	AD7	B	171	176	Right-handed 310
Helix 35	AD8	B	189	205	Right-handed alpha
Helix 36	AD9	B	216	232	Right-handed alpha
Helix 37	AE1	B	254	265	Right-handed alpha
Helix 38	AE2	B	276	290	Right-handed alpha
Helix 39	AE3	B	306	311	Right-handed alpha
Helix 40	AE4	B	314	318	Right-handed 310
Helix 41	AE5	B	333	347	Right-handed alpha
Helix 42	AE6	B	347	356	Right-handed alpha
Helix 43	AE7	B	377	382	Right-handed alpha
Helix 44	AE8	B	383	385	Right-handed 310
Helix 45	AE9	B	389	409	Right-handed alpha
Helix 46	AF1	B	422	425	Right-handed 310
Helix 47	AF2	B	426	431	Right-handed alpha
Helix 48	AF3	B	566	591	Right-handed alpha
Helix 49	AF4	B	596	603	Right-handed alpha
Helix 50	AF5	B	604	620	Right-handed alpha
Helix 51	AF6	B	629	635	Right-handed alpha
Helix 52	AF7	B	637	664	Right-handed alpha
Helix 53	AF8	B	665	677	Right-handed alpha
Helix 54	AF9	B	679	703	Right-handed alpha
Helix 55	AG1	B	727	734	Right-handed alpha
Helix 56	AG2	B	734	747	Right-handed alpha
Helix 57	AG3	B	761	783	Right-handed alpha
Helix 58	AG4	B	789	807	Right-handed alpha
Helix 59	AG5	B	810	824	Right-handed alpha

There are 13 sheets in PDB entry 9UT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	36	39	parallel
Strand 4	A	138	139	parallel
Strand 5	A	161	163	parallel
Strand 6	A	180	182	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	B	124	126	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	239	first strand
Strand 2	A	205	210	parallel
Strand 3	A	271	275	parallel
Strand 4	A	297	299	parallel
Strand 5	A	321	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	468	anti-parallel
Strand 8	A	475	476	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	435	436	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	A	515	518	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	536	537	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	715	719	parallel
Strand 3	A	705	708	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	95	98	anti-parallel
Strand 3	B	35	39	parallel
Strand 4	B	140	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	298	parallel
Strand 5	B	321	326	parallel
Strand 6	B	454	462	anti-parallel
Strand 7	B	465	474	anti-parallel
Strand 8	B	478	480	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	440	443	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	512	first strand
Strand 2	B	518	522	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	560	first strand
Strand 2	B	718	723	parallel
Strand 3	B	706	710	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT8