Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UT9 entry

There are 2 chains in PDB entry 9UT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 26	LYS 553
B	LEU 23	ARG 556

There are 32 helices in PDB entry 9UT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	85	Right-handed alpha
Helix 2	AA2	A	108	115	Right-handed alpha
Helix 3	AA3	A	143	155	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed 310
Helix 5	AA5	A	186	201	Right-handed alpha
Helix 6	AA6	A	213	229	Right-handed alpha
Helix 7	AA7	A	250	265	Right-handed alpha
Helix 8	AA8	A	280	291	Right-handed alpha
Helix 9	AA9	A	301	306	Right-handed alpha
Helix 10	AB1	A	313	319	Right-handed 310
Helix 11	AB2	A	335	341	Right-handed alpha
Helix 12	AB3	A	368	373	Right-handed alpha
Helix 13	AB4	A	373	380	Right-handed alpha
Helix 14	AB5	A	384	404	Right-handed alpha
Helix 15	AB6	A	416	425	Right-handed alpha
Helix 16	AB7	B	24	28	Right-handed 310
Helix 17	AB8	B	66	86	Right-handed alpha
Helix 18	AB9	B	105	117	Right-handed alpha
Helix 19	AC1	B	146	161	Right-handed alpha
Helix 20	AC2	B	171	176	Right-handed 310
Helix 21	AC3	B	189	205	Right-handed alpha
Helix 22	AC4	B	216	232	Right-handed alpha
Helix 23	AC5	B	254	265	Right-handed alpha
Helix 24	AC6	B	276	290	Right-handed alpha
Helix 25	AC7	B	306	311	Right-handed alpha
Helix 26	AC8	B	314	318	Right-handed 310
Helix 27	AC9	B	333	347	Right-handed alpha
Helix 28	AD1	B	347	356	Right-handed alpha
Helix 29	AD2	B	370	374	Right-handed 310
Helix 30	AD3	B	378	383	Right-handed alpha
Helix 31	AD4	B	389	408	Right-handed alpha
Helix 32	AD5	B	422	429	Right-handed 310

There are 11 sheets in PDB entry 9UT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	138	139	parallel
Strand 5	A	161	163	parallel
Strand 6	A	180	182	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	B	124	126	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	240	first strand
Strand 2	A	206	211	parallel
Strand 3	A	271	275	parallel
Strand 4	A	297	299	parallel
Strand 5	A	322	327	parallel
Strand 6	A	448	452	anti-parallel
Strand 7	A	463	468	anti-parallel
Strand 8	A	475	476	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	A	515	518	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	536	537	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	95	98	anti-parallel
Strand 3	B	35	36	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	141	142	parallel
Strand 3	B	164	166	parallel
Strand 4	B	183	185	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	299	parallel
Strand 5	B	321	326	parallel
Strand 6	B	454	462	anti-parallel
Strand 7	B	465	474	anti-parallel
Strand 8	B	478	480	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	441	443	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	512	first strand
Strand 2	B	518	522	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UT9