Analysis of interatomic Contacts of Structural Units in PDB entry:
9UTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UTB entry

There are 2 chains in PDB entry 9UTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 26	GLY 833
B	PRO 22	ASN 824

There are 54 helices in PDB entry 9UTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	85	Right-handed alpha
Helix 2	AA2	A	107	114	Right-handed alpha
Helix 3	AA3	A	143	158	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed 310
Helix 5	AA5	A	186	201	Right-handed alpha
Helix 6	AA6	A	213	228	Right-handed alpha
Helix 7	AA7	A	250	267	Right-handed alpha
Helix 8	AA8	A	277	291	Right-handed alpha
Helix 9	AA9	A	301	306	Right-handed alpha
Helix 10	AB1	A	307	312	Right-handed alpha
Helix 11	AB2	A	316	320	Right-handed 310
Helix 12	AB3	A	335	341	Right-handed alpha
Helix 13	AB4	A	365	373	Right-handed alpha
Helix 14	AB5	A	373	381	Right-handed alpha
Helix 15	AB6	A	383	403	Right-handed alpha
Helix 16	AB7	A	416	425	Right-handed alpha
Helix 17	AB8	A	563	590	Right-handed alpha
Helix 18	AB9	A	593	599	Right-handed alpha
Helix 19	AC1	A	601	622	Right-handed alpha
Helix 20	AC2	A	626	660	Right-handed alpha
Helix 21	AC3	A	665	675	Right-handed alpha
Helix 22	AC4	A	676	700	Right-handed alpha
Helix 23	AC5	A	723	749	Right-handed alpha
Helix 24	AC6	A	757	783	Right-handed alpha
Helix 25	AC7	A	787	818	Right-handed alpha
Helix 26	AC8	A	819	822	Right-handed 310
Helix 27	AC9	A	823	833	Right-handed alpha
Helix 28	AD1	B	26	30	Right-handed 310
Helix 29	AD2	B	66	86	Right-handed alpha
Helix 30	AD3	B	105	117	Right-handed alpha
Helix 31	AD4	B	146	160	Right-handed alpha
Helix 32	AD5	B	171	176	Right-handed 310
Helix 33	AD6	B	189	204	Right-handed alpha
Helix 34	AD7	B	216	234	Right-handed alpha
Helix 35	AD8	B	250	266	Right-handed alpha
Helix 36	AD9	B	276	290	Right-handed alpha
Helix 37	AE1	B	306	311	Right-handed alpha
Helix 38	AE2	B	314	318	Right-handed 310
Helix 39	AE3	B	333	347	Right-handed alpha
Helix 40	AE4	B	347	358	Right-handed alpha
Helix 41	AE5	B	377	381	Right-handed 310
Helix 42	AE6	B	387	408	Right-handed alpha
Helix 43	AE7	B	422	429	Right-handed alpha
Helix 44	AE8	B	481	485	Right-handed 310
Helix 45	AE9	B	566	593	Right-handed alpha
Helix 46	AF1	B	596	602	Right-handed alpha
Helix 47	AF2	B	604	622	Right-handed alpha
Helix 48	AF3	B	629	663	Right-handed alpha
Helix 49	AF4	B	666	678	Right-handed alpha
Helix 50	AF5	B	678	703	Right-handed alpha
Helix 51	AF6	B	726	750	Right-handed alpha
Helix 52	AF7	B	759	785	Right-handed alpha
Helix 53	AF8	B	788	809	Right-handed alpha
Helix 54	AF9	B	810	824	Right-handed alpha

There are 16 sheets in PDB entry 9UTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	94	98	anti-parallel
Strand 3	A	33	37	parallel
Strand 4	A	135	139	parallel
Strand 5	A	161	162	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	B	124	126	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	A	205	211	parallel
Strand 3	A	271	275	parallel
Strand 4	A	297	300	parallel
Strand 5	A	321	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	469	anti-parallel
Strand 8	A	474	476	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	435	437	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	515	519	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	536	537	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	715	719	parallel
Strand 3	A	705	708	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	99	101	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	164	166	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	208	213	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	298	parallel
Strand 5	B	321	326	parallel
Strand 6	B	454	458	anti-parallel
Strand 7	B	470	474	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	440	443	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	B	519	522	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	539	540	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	546	first strand
Strand 2	B	555	556	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	560	first strand
Strand 2	B	717	723	parallel
Strand 3	B	706	710	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UTB