Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UU3 entry

There are 4 chains in PDB entry 9UU3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 14	HIS 424
C	SER 68	LEU 494
D	GLY 14	HIS 424
B	SER 68	LEU 494

There are 62 helices in PDB entry 9UU3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	43	Right-handed alpha
Helix 2	AA2	A	69	77	Right-handed alpha
Helix 3	AA3	A	117	123	Right-handed alpha
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	142	146	Right-handed 310
Helix 6	AA6	A	173	189	Right-handed alpha
Helix 7	AA7	A	242	249	Right-handed alpha
Helix 8	AA8	A	264	276	Right-handed alpha
Helix 9	AA9	A	320	330	Right-handed alpha
Helix 10	AB1	A	337	342	Right-handed alpha
Helix 11	AB2	A	411	424	Right-handed alpha
Helix 12	AB3	C	76	81	Right-handed alpha
Helix 13	AB4	C	98	102	Right-handed 310
Helix 14	AB5	C	104	116	Right-handed alpha
Helix 15	AB6	C	122	131	Right-handed alpha
Helix 16	AB7	C	156	164	Right-handed alpha
Helix 17	AB8	C	164	176	Right-handed alpha
Helix 18	AB9	C	178	182	Right-handed 310
Helix 19	AC1	C	197	207	Right-handed alpha
Helix 20	AC2	C	220	222	Right-handed 310
Helix 21	AC3	C	223	236	Right-handed alpha
Helix 22	AC4	C	283	288	Right-handed 310
Helix 23	AC5	C	329	343	Right-handed alpha
Helix 24	AC6	C	345	350	Right-handed alpha
Helix 25	AC7	C	351	363	Right-handed alpha
Helix 26	AC8	C	363	368	Right-handed alpha
Helix 27	AC9	C	392	403	Right-handed alpha
Helix 28	AD1	C	410	420	Right-handed alpha
Helix 29	AD2	C	426	438	Right-handed alpha
Helix 30	AD3	C	480	484	Right-handed 310
Helix 31	AD4	D	38	44	Right-handed alpha
Helix 32	AD5	D	69	75	Right-handed alpha
Helix 33	AD6	D	117	123	Right-handed alpha
Helix 34	AD7	D	129	134	Right-handed alpha
Helix 35	AD8	D	142	146	Right-handed 310
Helix 36	AD9	D	173	190	Right-handed alpha
Helix 37	AE1	D	242	251	Right-handed alpha
Helix 38	AE2	D	264	276	Right-handed alpha
Helix 39	AE3	D	320	330	Right-handed alpha
Helix 40	AE4	D	411	424	Right-handed alpha
Helix 41	AE5	B	76	81	Right-handed alpha
Helix 42	AE6	B	98	102	Right-handed 310
Helix 43	AE7	B	104	116	Right-handed alpha
Helix 44	AE8	B	122	131	Right-handed alpha
Helix 45	AE9	B	153	164	Right-handed alpha
Helix 46	AF1	B	164	176	Right-handed alpha
Helix 47	AF2	B	178	182	Right-handed 310
Helix 48	AF3	B	197	207	Right-handed alpha
Helix 49	AF4	B	220	222	Right-handed 310
Helix 50	AF5	B	223	239	Right-handed alpha
Helix 51	AF6	B	262	264	Right-handed 310
Helix 52	AF7	B	265	271	Right-handed alpha
Helix 53	AF8	B	305	310	Right-handed alpha
Helix 54	AF9	B	329	335	Right-handed alpha
Helix 55	AG1	B	338	343	Right-handed alpha
Helix 56	AG2	B	345	350	Right-handed alpha
Helix 57	AG3	B	351	363	Right-handed alpha
Helix 58	AG4	B	363	368	Right-handed alpha
Helix 59	AG5	B	392	403	Right-handed alpha
Helix 60	AG6	B	410	420	Right-handed alpha
Helix 61	AG7	B	426	438	Right-handed alpha
Helix 62	AG8	B	477	484	Right-handed 310

There are 13 sheets in PDB entry 9UU3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	23	24	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	149	155	parallel
Strand 4	A	161	168	anti-parallel
Strand 5	A	48	55	anti-parallel
Strand 6	A	376	382	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	83	86	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	241	first strand
Strand 2	A	401	407	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	354	357	parallel
Strand 5	A	285	289	parallel
Strand 6	A	305	309	anti-parallel
Strand 7	A	333	334	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	184	189	parallel
Strand 3	C	243	248	parallel
Strand 4	C	276	281	anti-parallel
Strand 5	C	87	94	anti-parallel
Strand 6	C	292	298	anti-parallel
Strand 7	C	458	465	anti-parallel
Strand 8	C	446	452	anti-parallel
Strand 9	C	385	388	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	316	first strand
Strand 2	C	322	326	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	149	156	parallel
Strand 4	D	113	114	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	149	156	parallel
Strand 4	D	161	168	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	376	382	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	98	101	anti-parallel
Strand 3	D	83	86	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	241	first strand
Strand 2	D	401	407	anti-parallel
Strand 3	D	389	393	anti-parallel
Strand 4	D	355	357	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	289	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	333	334	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	184	188	parallel
Strand 3	B	243	248	parallel
Strand 4	B	276	281	anti-parallel
Strand 5	B	88	94	anti-parallel
Strand 6	B	292	298	anti-parallel
Strand 7	B	458	465	anti-parallel
Strand 8	B	446	452	anti-parallel
Strand 9	B	385	388	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	316	first strand
Strand 2	B	322	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UU3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU3