Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UU4 entry

There are 4 chains in PDB entry 9UU4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 14	HIS 424
D	GLY 14	HIS 424
C	SER 68	LEU 494
B	SER 68	LEU 494

There are 53 helices in PDB entry 9UU4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	77	Right-handed alpha
Helix 2	AA2	A	117	123	Right-handed alpha
Helix 3	AA3	A	142	146	Right-handed 310
Helix 4	AA4	A	173	189	Right-handed alpha
Helix 5	AA5	A	242	249	Right-handed alpha
Helix 6	AA6	A	264	279	Right-handed alpha
Helix 7	AA7	A	320	329	Right-handed alpha
Helix 8	AA8	A	335	341	Right-handed alpha
Helix 9	AA9	A	363	367	Right-handed 310
Helix 10	AB1	A	411	424	Right-handed alpha
Helix 11	AB2	D	69	77	Right-handed alpha
Helix 12	AB3	D	117	123	Right-handed alpha
Helix 13	AB4	D	129	134	Right-handed alpha
Helix 14	AB5	D	142	146	Right-handed 310
Helix 15	AB6	D	173	189	Right-handed alpha
Helix 16	AB7	D	242	249	Right-handed alpha
Helix 17	AB8	D	250	252	Right-handed 310
Helix 18	AB9	D	264	277	Right-handed alpha
Helix 19	AC1	D	320	331	Right-handed alpha
Helix 20	AC2	D	335	342	Right-handed alpha
Helix 21	AC3	D	363	367	Right-handed 310
Helix 22	AC4	D	411	419	Right-handed alpha
Helix 23	AC5	D	419	424	Right-handed alpha
Helix 24	AC6	C	72	79	Right-handed alpha
Helix 25	AC7	C	104	116	Right-handed alpha
Helix 26	AC8	C	121	131	Right-handed alpha
Helix 27	AC9	C	153	164	Right-handed alpha
Helix 28	AD1	C	164	173	Right-handed alpha
Helix 29	AD2	C	197	207	Right-handed alpha
Helix 30	AD3	C	220	222	Right-handed 310
Helix 31	AD4	C	223	239	Right-handed alpha
Helix 32	AD5	C	284	288	Right-handed 310
Helix 33	AD6	C	305	310	Right-handed alpha
Helix 34	AD7	C	329	350	Right-handed alpha
Helix 35	AD8	C	355	359	Right-handed 310
Helix 36	AD9	C	392	404	Right-handed alpha
Helix 37	AE1	C	411	420	Right-handed alpha
Helix 38	AE2	C	426	438	Right-handed alpha
Helix 39	AE3	B	74	79	Right-handed alpha
Helix 40	AE4	B	80	83	Right-handed 310
Helix 41	AE5	B	104	116	Right-handed alpha
Helix 42	AE6	B	118	131	Right-handed alpha
Helix 43	AE7	B	153	164	Right-handed alpha
Helix 44	AE8	B	167	176	Right-handed alpha
Helix 45	AE9	B	197	207	Right-handed alpha
Helix 46	AF1	B	223	239	Right-handed alpha
Helix 47	AF2	B	252	256	Right-handed 310
Helix 48	AF3	B	283	288	Right-handed 310
Helix 49	AF4	B	305	310	Right-handed alpha
Helix 50	AF5	B	329	350	Right-handed alpha
Helix 51	AF6	B	392	402	Right-handed alpha
Helix 52	AF7	B	411	420	Right-handed alpha
Helix 53	AF8	B	426	438	Right-handed alpha

There are 11 sheets in PDB entry 9UU4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	48	55	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	149	156	anti-parallel
Strand 5	A	107	114	parallel
Strand 6	A	16	24	anti-parallel
Strand 7	B	146	147	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	83	86	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	241	first strand
Strand 2	A	401	407	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	354	357	parallel
Strand 5	A	284	289	parallel
Strand 6	A	305	310	anti-parallel
Strand 7	A	333	334	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	24	first strand
Strand 2	D	107	114	anti-parallel
Strand 3	D	149	155	parallel
Strand 4	D	161	168	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	376	382	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	98	101	anti-parallel
Strand 3	D	83	86	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	346	347	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	241	first strand
Strand 2	D	401	408	anti-parallel
Strand 3	D	389	394	anti-parallel
Strand 4	D	354	358	parallel
Strand 5	D	285	289	parallel
Strand 6	D	305	309	anti-parallel
Strand 7	D	333	334	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	182	189	parallel
Strand 3	C	243	249	parallel
Strand 4	C	275	281	anti-parallel
Strand 5	C	88	94	anti-parallel
Strand 6	C	292	298	anti-parallel
Strand 7	C	458	465	anti-parallel
Strand 8	C	446	452	anti-parallel
Strand 9	C	385	388	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	316	first strand
Strand 2	C	322	326	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	182	188	parallel
Strand 3	B	243	249	parallel
Strand 4	B	275	281	anti-parallel
Strand 5	B	88	94	anti-parallel
Strand 6	B	292	298	anti-parallel
Strand 7	B	458	465	anti-parallel
Strand 8	B	446	452	anti-parallel
Strand 9	B	385	388	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	316	first strand
Strand 2	B	322	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UU4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU4