Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UU5 entry

There are 4 chains in PDB entry 9UU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 14	HIS 424
B	SER 68	LEU 494
D	GLY 14	HIS 424
C	SER 68	LEU 494

There are 65 helices in PDB entry 9UU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	77	Right-handed alpha
Helix 2	AA2	A	117	123	Right-handed alpha
Helix 3	AA3	A	129	134	Right-handed alpha
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	174	189	Right-handed alpha
Helix 6	AA6	A	242	247	Right-handed alpha
Helix 7	AA7	A	248	253	Right-handed 310
Helix 8	AA8	A	266	279	Right-handed alpha
Helix 9	AA9	A	320	331	Right-handed alpha
Helix 10	AB1	A	335	341	Right-handed alpha
Helix 11	AB2	A	363	367	Right-handed 310
Helix 12	AB3	A	410	412	Right-handed 310
Helix 13	AB4	A	414	419	Right-handed alpha
Helix 14	AB5	A	419	424	Right-handed alpha
Helix 15	AB6	B	74	79	Right-handed alpha
Helix 16	AB7	B	98	102	Right-handed 310
Helix 17	AB8	B	104	116	Right-handed alpha
Helix 18	AB9	B	119	133	Right-handed alpha
Helix 19	AC1	B	152	164	Right-handed alpha
Helix 20	AC2	B	164	175	Right-handed alpha
Helix 21	AC3	B	178	180	Right-handed 310
Helix 22	AC4	B	197	207	Right-handed alpha
Helix 23	AC5	B	220	224	Right-handed 310
Helix 24	AC6	B	226	239	Right-handed alpha
Helix 25	AC7	B	252	256	Right-handed 310
Helix 26	AC8	B	284	288	Right-handed 310
Helix 27	AC9	B	305	310	Right-handed alpha
Helix 28	AD1	B	329	338	Right-handed alpha
Helix 29	AD2	B	338	350	Right-handed alpha
Helix 30	AD3	B	354	358	Right-handed 310
Helix 31	AD4	B	362	367	Right-handed alpha
Helix 32	AD5	B	378	382	Right-handed 310
Helix 33	AD6	B	392	402	Right-handed alpha
Helix 34	AD7	B	411	420	Right-handed alpha
Helix 35	AD8	B	426	438	Right-handed alpha
Helix 36	AD9	D	69	77	Right-handed alpha
Helix 37	AE1	D	117	123	Right-handed alpha
Helix 38	AE2	D	129	134	Right-handed alpha
Helix 39	AE3	D	142	146	Right-handed 310
Helix 40	AE4	D	174	190	Right-handed alpha
Helix 41	AE5	D	242	248	Right-handed alpha
Helix 42	AE6	D	266	277	Right-handed alpha
Helix 43	AE7	D	320	331	Right-handed alpha
Helix 44	AE8	D	335	341	Right-handed alpha
Helix 45	AE9	D	414	419	Right-handed alpha
Helix 46	AF1	D	419	424	Right-handed alpha
Helix 47	AF2	C	72	77	Right-handed alpha
Helix 48	AF3	C	98	102	Right-handed 310
Helix 49	AF4	C	104	116	Right-handed alpha
Helix 50	AF5	C	122	130	Right-handed alpha
Helix 51	AF6	C	153	164	Right-handed alpha
Helix 52	AF7	C	164	169	Right-handed alpha
Helix 53	AF8	C	178	180	Right-handed 310
Helix 54	AF9	C	197	207	Right-handed alpha
Helix 55	AG1	C	220	223	Right-handed 310
Helix 56	AG2	C	224	237	Right-handed alpha
Helix 57	AG3	C	252	256	Right-handed 310
Helix 58	AG4	C	265	271	Right-handed alpha
Helix 59	AG5	C	305	310	Right-handed alpha
Helix 60	AG6	C	329	338	Right-handed alpha
Helix 61	AG7	C	338	350	Right-handed alpha
Helix 62	AG8	C	361	365	Right-handed 310
Helix 63	AG9	C	392	404	Right-handed alpha
Helix 64	AH1	C	411	420	Right-handed alpha
Helix 65	AH2	C	426	438	Right-handed alpha

There are 12 sheets in PDB entry 9UU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	24	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	149	155	parallel
Strand 4	A	161	168	anti-parallel
Strand 5	A	48	55	anti-parallel
Strand 6	A	376	382	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	83	86	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	241	first strand
Strand 2	A	401	408	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	354	357	parallel
Strand 5	A	285	289	parallel
Strand 6	A	305	308	anti-parallel
Strand 7	A	333	334	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	182	189	parallel
Strand 3	B	243	249	parallel
Strand 4	B	275	281	anti-parallel
Strand 5	B	88	94	anti-parallel
Strand 6	B	292	293	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	446	450	anti-parallel
Strand 4	B	385	388	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	316	first strand
Strand 2	B	322	326	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	24	first strand
Strand 2	D	107	114	anti-parallel
Strand 3	D	149	155	parallel
Strand 4	D	161	167	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	376	382	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	98	101	anti-parallel
Strand 3	D	83	86	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	241	first strand
Strand 2	D	401	407	anti-parallel
Strand 3	D	389	394	anti-parallel
Strand 4	D	354	357	parallel
Strand 5	D	285	289	parallel
Strand 6	D	305	309	anti-parallel
Strand 7	D	332	334	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	217	first strand
Strand 2	C	182	188	parallel
Strand 3	C	243	249	parallel
Strand 4	C	275	281	anti-parallel
Strand 5	C	88	94	anti-parallel
Strand 6	C	292	293	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	460	464	anti-parallel
Strand 3	C	446	450	anti-parallel
Strand 4	C	385	388	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	316	first strand
Strand 2	C	322	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UU5