Analysis of interatomic Contacts of Structural Units in PDB entry:
9UUR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UUR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9UUR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASP 217
A
 MET 219ASN 221
A
 PHE 223ILE 379
B
 GLY 26GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9UUR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
108 118Right-handed alpha
Helix 3
AA3
A
150 159Right-handed alpha
Helix 4
AA4
A
162 185Right-handed alpha
Helix 5
AA5
A
226 230Right-handed 310
Helix 6
AA6
A
231 236Right-handed alpha
Helix 7
AA7
A
242 257Right-handed alpha
Helix 8
AA8
A
267 275Right-handed alpha
Helix 9
AA9
A
309 319Right-handed alpha
Helix 10
AB1
A
332 341Right-handed alpha
Helix 11
AB2
A
351 357Right-handed alpha
Helix 12
AB3
A
358 367Right-handed alpha
Helix 13
AB4
A
370 377Right-handed alpha
Helix 14
AB5
B
78 93Right-handed alpha
Helix 15
AB6
B
129 133Right-handed alpha
Helix 16
AB7
B
139 158Right-handed alpha
Helix 17
AB8
B
212 218Right-handed alpha
Helix 18
AB9
B
223 226Right-handed 310
Helix 19
AC1
B
227 241Right-handed alpha
Helix 20
AC2
B
249 262Right-handed alpha
Helix 21
AC3
B
265 270Right-handed alpha
Helix 22
AC4
B
274 283Right-handed alpha
Helix 23
AC5
B
291 296Right-handed alpha
Helix 24
AC6
B
300 310Right-handed alpha
Helix 25
AC7
B
320 325Right-handed alpha
Helix 26
AC8
B
327 331Right-handed 310
Helix 27
AC9
B
335 339Right-handed 310
Helix 28
AD1
B
358 368Right-handed alpha
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There are 6 sheets in PDB entry 9UUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
131 135anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
213 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
35 36anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
66 73anti-parallel
Strand 4
B
118 122anti-parallel
Strand 5
B
105 107anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
180 182anti-parallel
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