Analysis of interatomic Contacts of Structural Units in PDB entry:
9UUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UUW entry

There are 4 chains in PDB entry 9UUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4THR 203
A
 TYR 205SER 379
B
 PRO 4THR 203
B
 TYR 205SER 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9UUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
66 80Right-handed alpha
Helix 3
AA3
A
90 103Right-handed alpha
Helix 4
AA4
A
113 126Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
161 172Right-handed alpha
Helix 7
AA7
A
189 194Right-handed 310
Helix 8
AA8
A
221 236Right-handed alpha
Helix 9
AA9
A
240 275Right-handed alpha
Helix 10
AB1
A
276 279Right-handed 310
Helix 11
AB2
A
287 291Right-handed 310
Helix 12
AB3
A
293 300Right-handed alpha
Helix 13
AB4
A
314 321Right-handed alpha
Helix 14
AB5
A
322 325Right-handed 310
Helix 15
AB6
A
345 347Right-handed 310
Helix 16
AB7
A
364 377Right-handed alpha
Helix 17
AB8
B
8 13Right-handed alpha
Helix 18
AB9
B
66 80Right-handed alpha
Helix 19
AC1
B
90 103Right-handed alpha
Helix 20
AC2
B
113 126Right-handed alpha
Helix 21
AC3
B
137 141Right-handed 310
Helix 22
AC4
B
161 172Right-handed alpha
Helix 23
AC5
B
189 194Right-handed 310
Helix 24
AC6
B
221 236Right-handed alpha
Helix 25
AC7
B
240 252Right-handed alpha
Helix 26
AC8
B
253 275Right-handed alpha
Helix 27
AC9
B
276 279Right-handed 310
Helix 28
AD1
B
287 291Right-handed 310
Helix 29
AD2
B
293 300Right-handed alpha
Helix 30
AD3
B
314 321Right-handed alpha
Helix 31
AD4
B
322 325Right-handed 310
Helix 32
AD5
B
345 347Right-handed 310
Helix 33
AD6
B
364 377Right-handed alpha
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There are 4 sheets in PDB entry 9UUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
197 200anti-parallel
Strand 4
A
175 179parallel
Strand 5
A
146 150parallel
Strand 6
A
106 109parallel
Strand 7
A
131 133parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 286first strand
Strand 2
A
307 312anti-parallel
Strand 3
A
356 359anti-parallel
Strand 4
A
340 343anti-parallel
Strand 5
A
329 330parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
215 219anti-parallel
Strand 3
B
197 200anti-parallel
Strand 4
B
175 179parallel
Strand 5
B
146 150parallel
Strand 6
B
106 109parallel
Strand 7
B
131 133parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 286first strand
Strand 2
B
307 312anti-parallel
Strand 3
B
355 359anti-parallel
Strand 4
B
340 343anti-parallel
Strand 5
B
329 330parallel
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