Analysis of interatomic Contacts of Structural Units in PDB entry:
9UUX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UUX entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9UUX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 217
A
 MET 219ASN 221
A
 PHE 223THR 378
B
 GLU 27LEU 201
B
 GLU 203VAL 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9UUX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
107 112Right-handed alpha
Helix 3
AA3
A
114 119Right-handed alpha
Helix 4
AA4
A
150 159Right-handed alpha
Helix 5
AA5
A
162 185Right-handed alpha
Helix 6
AA6
A
226 230Right-handed 310
Helix 7
AA7
A
231 236Right-handed alpha
Helix 8
AA8
A
241 257Right-handed alpha
Helix 9
AA9
A
267 275Right-handed alpha
Helix 10
AB1
A
309 319Right-handed alpha
Helix 11
AB2
A
332 341Right-handed alpha
Helix 12
AB3
A
351 357Right-handed alpha
Helix 13
AB4
A
358 366Right-handed alpha
Helix 14
AB5
A
370 378Right-handed alpha
Helix 15
AB6
B
78 93Right-handed alpha
Helix 16
AB7
B
129 133Right-handed alpha
Helix 17
AB8
B
139 158Right-handed alpha
Helix 18
AB9
B
212 218Right-handed alpha
Helix 19
AC1
B
227 241Right-handed alpha
Helix 20
AC2
B
249 262Right-handed alpha
Helix 21
AC3
B
265 270Right-handed alpha
Helix 22
AC4
B
276 283Right-handed alpha
Helix 23
AC5
B
291 296Right-handed alpha
Helix 24
AC6
B
300 308Right-handed alpha
Helix 25
AC7
B
320 326Right-handed alpha
Helix 26
AC8
B
327 331Right-handed 310
Helix 27
AC9
B
335 339Right-handed 310
Helix 28
AD1
B
359 368Right-handed alpha
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There are 6 sheets in PDB entry 9UUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
131 135anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
213 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
35 36anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
118 123anti-parallel
Strand 5
B
103 107anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
180 182anti-parallel
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