Analysis of interatomic Contacts of Structural Units in PDB entry:
9UVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UVB entry

There are 2 chains in PDB entry 9UVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 1001VAL 1375
F
 HIS 999GLN 1374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9UVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
1019 1028Right-handed alpha
Helix 2
AA2
E
1040 1044Right-handed 310
Helix 3
AA3
E
1046 1053Right-handed alpha
Helix 4
AA4
E
1059 1065Right-handed 310
Helix 5
AA5
E
1105 1109Right-handed 310
Helix 6
AA6
E
1121 1127Right-handed 310
Helix 7
AA7
E
1128 1149Right-handed alpha
Helix 8
AA8
E
1177 1188Right-handed alpha
Helix 9
AA9
E
1200 1205Right-handed alpha
Helix 10
AB1
E
1224 1229Right-handed alpha
Helix 11
AB2
E
1232 1249Right-handed alpha
Helix 12
AB3
E
1315 1318Right-handed 310
Helix 13
AB4
E
1319 1324Right-handed alpha
Helix 14
AB5
E
1327 1339Right-handed alpha
Helix 15
AB6
E
1353 1359Right-handed alpha
Helix 16
AB7
E
1361 1365Right-handed 310
Helix 17
AB8
F
1019 1029Right-handed alpha
Helix 18
AB9
F
1038 1043Right-handed 310
Helix 19
AC1
F
1046 1054Right-handed alpha
Helix 20
AC2
F
1059 1063Right-handed 310
Helix 21
AC3
F
1078 1083Right-handed alpha
Helix 22
AC4
F
1100 1108Right-handed alpha
Helix 23
AC5
F
1129 1146Right-handed alpha
Helix 24
AC6
F
1174 1187Right-handed alpha
Helix 25
AC7
F
1203 1208Right-handed alpha
Helix 26
AC8
F
1231 1235Right-handed 310
Helix 27
AC9
F
1237 1242Right-handed alpha
Helix 28
AD1
F
1242 1247Right-handed alpha
Helix 29
AD2
F
1285 1287Right-handed 310
Helix 30
AD3
F
1315 1319Right-handed 310
Helix 31
AD4
F
1324 1340Right-handed alpha
Helix 32
AD5
F
1352 1359Right-handed alpha
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There are 6 sheets in PDB entry 9UVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1004 1005first strand
Strand 2
E
1034 1035parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1068 1070first strand
Strand 2
E
1088 1091parallel
Strand 3
E
1112 1114parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1210 1211first strand
Strand 2
E
1192 1194parallel
Strand 3
E
1168 1171parallel
Strand 4
E
1251 1252parallel
Strand 5
E
1280 1282parallel
Strand 6
E
1307 1310parallel
Strand 7
E
1300 1303anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1002 1003first strand
Strand 2
F
1032 1033parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1156 1158first strand
Strand 2
F
1161 1163anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1210 1211first strand
Strand 2
F
1190 1193parallel
Strand 3
F
1167 1170parallel
Strand 4
F
1251 1254parallel
Strand 5
F
1280 1283parallel
Strand 6
F
1308 1310parallel
Strand 7
F
1300 1302anti-parallel
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