Analysis of interatomic Contacts of Structural Units in PDB entry:
9UVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UVC entry

There are 3 chains in PDB entry 9UVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 66	LYS 648
B	PHE 67	LYS 648
C	PHE 67	LYS 648

There are 13 helices in PDB entry 9UVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	147	156	Right-handed alpha
Helix 2	AA2	A	365	380	Right-handed alpha
Helix 3	AA3	A	451	496	Right-handed alpha
Helix 4	AA4	A	499	508	Right-handed alpha
Helix 5	AA5	B	148	157	Right-handed alpha
Helix 6	AA6	B	362	380	Right-handed alpha
Helix 7	AA7	B	451	496	Right-handed alpha
Helix 8	AA8	B	499	508	Right-handed alpha
Helix 9	AA9	C	147	156	Right-handed alpha
Helix 10	AB1	C	282	286	Right-handed 310
Helix 11	AB2	C	365	380	Right-handed alpha
Helix 12	AB3	C	451	497	Right-handed alpha
Helix 13	AB4	C	499	505	Right-handed alpha

There are 17 sheets in PDB entry 9UVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	78	80	anti-parallel
Strand 3	C	618	619	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	319	332	anti-parallel
Strand 4	A	96	105	anti-parallel
Strand 5	A	400	407	anti-parallel
Strand 6	A	385	386	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	319	332	anti-parallel
Strand 4	A	96	105	anti-parallel
Strand 5	A	400	407	anti-parallel
Strand 6	A	392	394	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	221	233	anti-parallel
Strand 3	A	240	241	anti-parallel
Strand 4	A	247	248	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	221	233	anti-parallel
Strand 3	A	110	122	anti-parallel
Strand 4	A	304	308	anti-parallel
Strand 5	A	295	299	anti-parallel
Strand 6	A	269	272	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	619	first strand
Strand 2	B	79	80	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	337	340	anti-parallel
Strand 3	B	319	332	anti-parallel
Strand 4	B	96	105	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	385	386	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	337	340	anti-parallel
Strand 3	B	319	332	anti-parallel
Strand 4	B	96	105	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	392	394	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	110	123	anti-parallel
Strand 3	B	220	233	anti-parallel
Strand 4	B	197	199	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	110	123	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	295	298	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	247	248	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	522	523	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	319	332	anti-parallel
Strand 4	C	96	105	anti-parallel
Strand 5	C	400	407	anti-parallel
Strand 6	C	385	386	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	319	332	anti-parallel
Strand 4	C	96	105	anti-parallel
Strand 5	C	400	407	anti-parallel
Strand 6	C	392	394	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	110	123	anti-parallel
Strand 3	C	221	233	anti-parallel
Strand 4	C	240	241	anti-parallel
Strand 5	C	247	248	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	221	233	anti-parallel
Strand 3	C	110	123	anti-parallel
Strand 4	C	304	307	anti-parallel
Strand 5	C	296	299	anti-parallel
Strand 6	C	269	271	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	183	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UVC