Analysis of interatomic Contacts of Structural Units in PDB entry:
9UW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UW4 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9UW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 29GLY 374
A
 PRO 2ASP 217
A
 MET 219ASN 221
A
 PHE 223LEU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 9UW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
78 93Right-handed alpha
Helix 2
AA2
B
129 133Right-handed alpha
Helix 3
AA3
B
139 160Right-handed alpha
Helix 4
AA4
B
225 241Right-handed alpha
Helix 5
AA5
B
249 262Right-handed alpha
Helix 6
AA6
B
265 270Right-handed alpha
Helix 7
AA7
B
274 284Right-handed alpha
Helix 8
AA8
B
291 296Right-handed alpha
Helix 9
AA9
B
300 311Right-handed alpha
Helix 10
AB1
B
320 325Right-handed alpha
Helix 11
AB2
B
335 339Right-handed 310
Helix 12
AB3
B
356 368Right-handed alpha
Helix 13
AB4
A
104 119Right-handed alpha
Helix 14
AB5
A
150 158Right-handed alpha
Helix 15
AB6
A
162 184Right-handed alpha
Helix 16
AB7
A
192 194Right-handed 310
Helix 17
AB8
A
231 236Right-handed alpha
Helix 18
AB9
A
242 259Right-handed alpha
Helix 19
AC1
A
267 274Right-handed alpha
Helix 20
AC2
A
309 319Right-handed alpha
Helix 21
AC3
A
331 342Right-handed alpha
Helix 22
AC4
A
351 357Right-handed alpha
Helix 23
AC5
A
358 366Right-handed alpha
Helix 24
AC6
A
370 375Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9UW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
118 122anti-parallel
Strand 5
B
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
129 135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il