Analysis of interatomic Contacts of Structural Units in PDB entry:
9UWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UWM entry

There are 5 chains in PDB entry 9UWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 361
B	GLU 3	SER 343
D	LYS 1	THR 36
G	THR 6	ARG 62
R	TYR 41	PHE 409

There are 31 helices in PDB entry 9UWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	210	216	Right-handed 310
Helix 4	AA4	A	229	245	Right-handed alpha
Helix 5	AA5	A	246	250	Right-handed 310
Helix 6	AA6	A	260	271	Right-handed alpha
Helix 7	AA7	A	274	278	Right-handed 310
Helix 8	AA8	A	279	283	Right-handed 310
Helix 9	AA9	A	298	319	Right-handed alpha
Helix 10	AB1	A	336	358	Right-handed alpha
Helix 11	AB2	B	4	25	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	D	7	20	Right-handed alpha
Helix 14	AB5	D	31	36	Right-handed alpha
Helix 15	AB6	G	7	24	Right-handed alpha
Helix 16	AB7	G	29	44	Right-handed alpha
Helix 17	AB8	R	42	62	Right-handed alpha
Helix 18	AB9	R	131	137	Right-handed alpha
Helix 19	AC1	R	137	173	Right-handed alpha
Helix 20	AC2	R	174	177	Right-handed 310
Helix 21	AC3	R	178	205	Right-handed alpha
Helix 22	AC4	R	210	215	Right-handed alpha
Helix 23	AC5	R	216	249	Right-handed alpha
Helix 24	AC6	R	258	267	Right-handed alpha
Helix 25	AC7	R	267	284	Right-handed alpha
Helix 26	AC8	R	298	330	Right-handed alpha
Helix 27	AC9	R	333	353	Right-handed alpha
Helix 28	AD1	R	353	359	Right-handed alpha
Helix 29	AD2	R	365	381	Right-handed alpha
Helix 30	AD3	R	382	392	Right-handed alpha
Helix 31	AD4	R	395	409	Right-handed alpha

There are 12 sheets in PDB entry 9UWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	327	330	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	286	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	72	first strand
Strand 2	R	85	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	76	first strand
Strand 2	R	81	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	94	first strand
Strand 2	R	107	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	120	121	first strand
Strand 2	R	126	127	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UWM