Analysis of interatomic Contacts of Structural Units in PDB entry:
9UX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UX9 entry

There are 11 chains in PDB entry 9UX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 43	ARG 134
B	ASP 24	GLY 101
C	LYS 15	ILE 111
D	LYS 31	SER 120
E	GLY 44	ARG 134
F	ASN 25	GLY 101
G	LYS 15	ILE 111
H	ARG 30	SER 120
I	G 13	A 131
J	A 19	C 135
K	ILE 543	ARG 1372

There are 64 helices in PDB entry 9UX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	24	28	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	27	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	89	Right-handed alpha
Helix 13	AB4	C	91	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	102	119	Right-handed alpha
Helix 18	AB9	E	45	57	Right-handed alpha
Helix 19	AC1	E	63	77	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	30	39	Right-handed alpha
Helix 23	AC5	F	49	74	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	27	36	Right-handed alpha
Helix 27	AC9	G	45	73	Right-handed alpha
Helix 28	AD1	G	79	89	Right-handed alpha
Helix 29	AD2	G	90	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	102	120	Right-handed alpha
Helix 34	AD7	K	548	556	Right-handed alpha
Helix 35	AD8	K	756	770	Right-handed alpha
Helix 36	AD9	K	786	798	Right-handed alpha
Helix 37	AE1	K	812	814	Right-handed 310
Helix 38	AE2	K	815	827	Right-handed alpha
Helix 39	AE3	K	838	843	Right-handed alpha
Helix 40	AE4	K	845	851	Right-handed alpha
Helix 41	AE5	K	861	866	Right-handed alpha
Helix 42	AE6	K	867	872	Right-handed alpha
Helix 43	AE7	K	883	888	Right-handed 310
Helix 44	AE8	K	892	899	Right-handed alpha
Helix 45	AE9	K	920	930	Right-handed alpha
Helix 46	AF1	K	966	971	Right-handed 310
Helix 47	AF2	K	973	977	Right-handed 310
Helix 48	AF3	K	1002	1014	Right-handed alpha
Helix 49	AF4	K	1038	1048	Right-handed alpha
Helix 50	AF5	K	1049	1052	Right-handed 310
Helix 51	AF6	K	1053	1061	Right-handed alpha
Helix 52	AF7	K	1074	1079	Right-handed alpha
Helix 53	AF8	K	1080	1087	Right-handed alpha
Helix 54	AF9	K	1089	1096	Right-handed alpha
Helix 55	AG1	K	1107	1120	Right-handed alpha
Helix 56	AG2	K	1138	1144	Right-handed alpha
Helix 57	AG3	K	1156	1161	Right-handed alpha
Helix 58	AG4	K	1181	1189	Right-handed alpha
Helix 59	AG5	K	1210	1230	Right-handed alpha
Helix 60	AG6	K	1243	1253	Right-handed alpha
Helix 61	AG7	K	1302	1306	Right-handed 310
Helix 62	AG8	K	1310	1316	Right-handed alpha
Helix 63	AG9	K	1319	1324	Right-handed alpha
Helix 64	AH1	K	1325	1330	Right-handed 310

There are 9 sheets in PDB entry 9UX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	776	779	first strand
Strand 2	K	906	911	parallel
Strand 3	K	878	881	parallel
Strand 4	K	808	810	parallel
Strand 5	K	856	859	parallel
Strand 6	K	832	834	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1124	1126	first strand
Strand 2	K	1152	1154	parallel
Strand 3	K	1100	1103	parallel
Strand 4	K	1171	1174	parallel
Strand 5	K	1201	1204	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UX9