Analysis of interatomic Contacts of Structural Units in PDB entry:
9UXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UXH entry

There are 6 chains in PDB entry 9UXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 3	T 30
B	A 30	A 56
E	ASN 227	GLU 444
F	MET 1	LEU 653
C	MET 1	ALA 388
D	MET 1	PHE 170

There are 67 helices in PDB entry 9UXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	228	244	Right-handed alpha
Helix 2	AA2	E	257	271	Right-handed alpha
Helix 3	AA3	E	278	317	Right-handed alpha
Helix 4	AA4	E	323	328	Right-handed alpha
Helix 5	AA5	E	335	342	Right-handed alpha
Helix 6	AA6	E	343	348	Right-handed alpha
Helix 7	AA7	E	353	361	Right-handed alpha
Helix 8	AA8	E	361	376	Right-handed alpha
Helix 9	AA9	E	386	416	Right-handed alpha
Helix 10	AB1	E	424	439	Right-handed alpha
Helix 11	AB2	E	440	442	Right-handed 310
Helix 12	AB3	F	39	41	Right-handed 310
Helix 13	AB4	F	42	51	Right-handed alpha
Helix 14	AB5	F	61	66	Right-handed alpha
Helix 15	AB6	F	118	130	Right-handed alpha
Helix 16	AB7	F	150	155	Right-handed alpha
Helix 17	AB8	F	161	166	Right-handed alpha
Helix 18	AB9	F	177	192	Right-handed alpha
Helix 19	AC1	F	196	227	Right-handed alpha
Helix 20	AC2	F	230	245	Right-handed alpha
Helix 21	AC3	F	257	271	Right-handed alpha
Helix 22	AC4	F	274	277	Right-handed 310
Helix 23	AC5	F	278	285	Right-handed alpha
Helix 24	AC6	F	286	334	Right-handed alpha
Helix 25	AC7	F	336	347	Right-handed alpha
Helix 26	AC8	F	356	361	Right-handed alpha
Helix 27	AC9	F	361	376	Right-handed alpha
Helix 28	AD1	F	379	416	Right-handed alpha
Helix 29	AD2	F	417	420	Right-handed 310
Helix 30	AD3	F	424	442	Right-handed alpha
Helix 31	AD4	F	445	469	Right-handed alpha
Helix 32	AD5	F	470	491	Right-handed alpha
Helix 33	AD6	F	492	496	Right-handed 310
Helix 34	AD7	F	524	528	Right-handed 310
Helix 35	AD8	F	530	552	Right-handed alpha
Helix 36	AD9	F	566	570	Right-handed 310
Helix 37	AE1	F	573	577	Right-handed 310
Helix 38	AE2	F	581	591	Right-handed alpha
Helix 39	AE3	F	594	612	Right-handed alpha
Helix 40	AE4	F	626	631	Right-handed alpha
Helix 41	AE5	F	649	653	Right-handed 310
Helix 42	AE6	C	3	29	Right-handed alpha
Helix 43	AE7	C	70	87	Right-handed alpha
Helix 44	AE8	C	106	115	Right-handed alpha
Helix 45	AE9	C	117	132	Right-handed alpha
Helix 46	AF1	C	139	148	Right-handed alpha
Helix 47	AF2	C	149	159	Right-handed alpha
Helix 48	AF3	C	168	181	Right-handed alpha
Helix 49	AF4	C	188	209	Right-handed alpha
Helix 50	AF5	C	218	246	Right-handed alpha
Helix 51	AF6	C	259	268	Right-handed alpha
Helix 52	AF7	C	271	296	Right-handed alpha
Helix 53	AF8	C	299	325	Right-handed alpha
Helix 54	AF9	C	329	345	Right-handed alpha
Helix 55	AG1	C	346	348	Right-handed 310
Helix 56	AG2	C	356	370	Right-handed alpha
Helix 57	AG3	C	378	384	Right-handed alpha
Helix 58	AG4	D	6	16	Right-handed alpha
Helix 59	AG5	D	17	37	Right-handed alpha
Helix 60	AG6	D	41	47	Right-handed alpha
Helix 61	AG7	D	48	53	Right-handed alpha
Helix 62	AG8	D	54	64	Right-handed alpha
Helix 63	AG9	D	67	76	Right-handed alpha
Helix 64	AH1	D	83	110	Right-handed alpha
Helix 65	AH2	D	132	136	Right-handed 310
Helix 66	AH3	D	137	156	Right-handed alpha
Helix 67	AH4	D	158	166	Right-handed alpha

There are 6 sheets in PDB entry 9UXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	330	first strand
Strand 2	E	381	382	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	23	first strand
Strand 2	F	3	12	anti-parallel
Strand 3	F	67	76	anti-parallel
Strand 4	F	80	86	anti-parallel
Strand 5	F	96	102	anti-parallel
Strand 6	F	116	117	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	560	564	parallel
Strand 3	F	617	622	parallel
Strand 4	F	29	34	parallel
Strand 5	F	635	641	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	507	first strand
Strand 2	F	514	518	anti-parallel
Strand 3	F	521	523	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	94	100	parallel
Strand 3	C	160	164	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UXH