Analysis of interatomic Contacts of Structural Units in PDB entry:
9UXL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UXL entry

There are 4 chains in PDB entry 9UXL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 653
D	MET 1	PHE 170
F	MET 1	LEU 653
C	MET 1	ALA 388

There are 84 helices in PDB entry 9UXL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	41	Right-handed 310
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed alpha
Helix 4	AA4	A	118	130	Right-handed alpha
Helix 5	AA5	A	150	155	Right-handed alpha
Helix 6	AA6	A	161	166	Right-handed alpha
Helix 7	AA7	A	177	192	Right-handed alpha
Helix 8	AA8	A	196	228	Right-handed alpha
Helix 9	AA9	A	228	244	Right-handed alpha
Helix 10	AB1	A	257	271	Right-handed alpha
Helix 11	AB2	A	278	317	Right-handed alpha
Helix 12	AB3	A	322	326	Right-handed 310
Helix 13	AB4	A	335	342	Right-handed alpha
Helix 14	AB5	A	343	348	Right-handed alpha
Helix 15	AB6	A	349	351	Right-handed 310
Helix 16	AB7	A	353	361	Right-handed alpha
Helix 17	AB8	A	361	376	Right-handed alpha
Helix 18	AB9	A	386	416	Right-handed alpha
Helix 19	AC1	A	424	441	Right-handed alpha
Helix 20	AC2	A	445	467	Right-handed alpha
Helix 21	AC3	A	470	493	Right-handed alpha
Helix 22	AC4	A	524	528	Right-handed 310
Helix 23	AC5	A	530	552	Right-handed alpha
Helix 24	AC6	A	566	570	Right-handed 310
Helix 25	AC7	A	572	577	Right-handed alpha
Helix 26	AC8	A	581	592	Right-handed alpha
Helix 27	AC9	A	594	612	Right-handed alpha
Helix 28	AD1	A	626	631	Right-handed alpha
Helix 29	AD2	A	649	653	Right-handed 310
Helix 30	AD3	D	6	16	Right-handed alpha
Helix 31	AD4	D	17	37	Right-handed alpha
Helix 32	AD5	D	41	47	Right-handed alpha
Helix 33	AD6	D	48	53	Right-handed alpha
Helix 34	AD7	D	54	64	Right-handed alpha
Helix 35	AD8	D	67	77	Right-handed alpha
Helix 36	AD9	D	84	110	Right-handed alpha
Helix 37	AE1	D	132	136	Right-handed 310
Helix 38	AE2	D	137	156	Right-handed alpha
Helix 39	AE3	D	158	166	Right-handed alpha
Helix 40	AE4	F	42	51	Right-handed alpha
Helix 41	AE5	F	61	66	Right-handed alpha
Helix 42	AE6	F	118	130	Right-handed alpha
Helix 43	AE7	F	143	147	Right-handed 310
Helix 44	AE8	F	150	155	Right-handed alpha
Helix 45	AE9	F	161	166	Right-handed alpha
Helix 46	AF1	F	177	192	Right-handed alpha
Helix 47	AF2	F	196	227	Right-handed alpha
Helix 48	AF3	F	230	245	Right-handed alpha
Helix 49	AF4	F	257	271	Right-handed alpha
Helix 50	AF5	F	274	277	Right-handed 310
Helix 51	AF6	F	278	285	Right-handed alpha
Helix 52	AF7	F	286	334	Right-handed alpha
Helix 53	AF8	F	335	347	Right-handed alpha
Helix 54	AF9	F	356	361	Right-handed alpha
Helix 55	AG1	F	361	376	Right-handed alpha
Helix 56	AG2	F	379	416	Right-handed alpha
Helix 57	AG3	F	417	422	Right-handed 310
Helix 58	AG4	F	424	440	Right-handed alpha
Helix 59	AG5	F	445	469	Right-handed alpha
Helix 60	AG6	F	470	491	Right-handed alpha
Helix 61	AG7	F	492	496	Right-handed 310
Helix 62	AG8	F	524	528	Right-handed 310
Helix 63	AG9	F	530	552	Right-handed alpha
Helix 64	AH1	F	566	570	Right-handed 310
Helix 65	AH2	F	581	591	Right-handed alpha
Helix 66	AH3	F	594	612	Right-handed alpha
Helix 67	AH4	F	626	631	Right-handed alpha
Helix 68	AH5	F	649	653	Right-handed 310
Helix 69	AH6	C	4	29	Right-handed alpha
Helix 70	AH7	C	70	87	Right-handed alpha
Helix 71	AH8	C	106	114	Right-handed alpha
Helix 72	AH9	C	117	132	Right-handed alpha
Helix 73	AI1	C	139	148	Right-handed alpha
Helix 74	AI2	C	149	159	Right-handed alpha
Helix 75	AI3	C	168	181	Right-handed alpha
Helix 76	AI4	C	188	208	Right-handed alpha
Helix 77	AI5	C	209	211	Right-handed 310
Helix 78	AI6	C	219	246	Right-handed alpha
Helix 79	AI7	C	259	268	Right-handed alpha
Helix 80	AI8	C	271	296	Right-handed alpha
Helix 81	AI9	C	299	325	Right-handed alpha
Helix 82	AJ1	C	329	345	Right-handed alpha
Helix 83	AJ2	C	356	370	Right-handed alpha
Helix 84	AJ3	C	378	384	Right-handed alpha

There are 10 sheets in PDB entry 9UXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	67	76	anti-parallel
Strand 4	A	80	86	anti-parallel
Strand 5	A	96	102	anti-parallel
Strand 6	A	116	117	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	560	564	parallel
Strand 3	A	617	622	parallel
Strand 4	A	29	34	parallel
Strand 5	A	635	641	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	381	383	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	508	first strand
Strand 2	A	513	518	anti-parallel
Strand 3	A	521	523	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	122	124	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	23	first strand
Strand 2	F	4	12	anti-parallel
Strand 3	F	67	75	anti-parallel
Strand 4	F	80	86	anti-parallel
Strand 5	F	96	102	anti-parallel
Strand 6	F	116	117	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	560	564	parallel
Strand 3	F	617	621	parallel
Strand 4	F	29	34	parallel
Strand 5	F	635	641	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	508	first strand
Strand 2	F	513	518	anti-parallel
Strand 3	F	521	523	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	96	99	parallel
Strand 3	C	51	55	parallel
Strand 4	C	215	217	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	353	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UXL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UXL