Analysis of interatomic Contacts of Structural Units in PDB entry:
9UY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UY2 entry

There are 6 chains in PDB entry 9UY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	LYS 240
B	ILE 4	LYS 240
C	SER 5	LYS 240
D	ILE 4	LYS 240
E	ILE 4	LYS 240
F	ILE 4	ALA 134

There are 54 helices in PDB entry 9UY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	28	45	Right-handed alpha
Helix 3	AA3	A	60	67	Right-handed alpha
Helix 4	AA4	A	70	96	Right-handed alpha
Helix 5	AA5	A	116	126	Right-handed alpha
Helix 6	AA6	A	142	154	Right-handed alpha
Helix 7	AA7	A	188	194	Right-handed alpha
Helix 8	AA8	A	200	211	Right-handed alpha
Helix 9	AA9	A	223	230	Right-handed alpha
Helix 10	AB1	B	16	20	Right-handed 310
Helix 11	AB2	B	28	45	Right-handed alpha
Helix 12	AB3	B	60	67	Right-handed alpha
Helix 13	AB4	B	70	96	Right-handed alpha
Helix 14	AB5	B	116	126	Right-handed alpha
Helix 15	AB6	B	142	154	Right-handed alpha
Helix 16	AB7	B	188	194	Right-handed alpha
Helix 17	AB8	B	200	210	Right-handed alpha
Helix 18	AB9	B	223	230	Right-handed alpha
Helix 19	AC1	C	16	20	Right-handed 310
Helix 20	AC2	C	28	44	Right-handed alpha
Helix 21	AC3	C	60	67	Right-handed alpha
Helix 22	AC4	C	70	96	Right-handed alpha
Helix 23	AC5	C	116	126	Right-handed alpha
Helix 24	AC6	C	142	154	Right-handed alpha
Helix 25	AC7	C	188	194	Right-handed alpha
Helix 26	AC8	C	200	210	Right-handed alpha
Helix 27	AC9	C	223	230	Right-handed alpha
Helix 28	AD1	D	15	20	Right-handed alpha
Helix 29	AD2	D	28	45	Right-handed alpha
Helix 30	AD3	D	60	68	Right-handed alpha
Helix 31	AD4	D	70	96	Right-handed alpha
Helix 32	AD5	D	116	126	Right-handed alpha
Helix 33	AD6	D	142	155	Right-handed alpha
Helix 34	AD7	D	188	195	Right-handed alpha
Helix 35	AD8	D	200	210	Right-handed alpha
Helix 36	AD9	D	223	230	Right-handed alpha
Helix 37	AE1	E	16	20	Right-handed 310
Helix 38	AE2	E	28	45	Right-handed alpha
Helix 39	AE3	E	60	67	Right-handed alpha
Helix 40	AE4	E	70	96	Right-handed alpha
Helix 41	AE5	E	116	126	Right-handed alpha
Helix 42	AE6	E	142	154	Right-handed alpha
Helix 43	AE7	E	188	194	Right-handed alpha
Helix 44	AE8	E	200	210	Right-handed alpha
Helix 45	AE9	E	223	230	Right-handed alpha
Helix 46	AF1	F	15	20	Right-handed alpha
Helix 47	AF2	F	28	45	Right-handed alpha
Helix 48	AF3	F	60	68	Right-handed alpha
Helix 49	AF4	F	70	96	Right-handed alpha
Helix 50	AF5	F	118	126	Right-handed alpha
Helix 51	AF6	F	142	155	Right-handed alpha
Helix 52	AF7	F	188	195	Right-handed alpha
Helix 53	AF8	F	200	210	Right-handed alpha
Helix 54	AF9	F	223	230	Right-handed alpha

There are 9 sheets in PDB entry 9UY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	100	104	parallel
Strand 3	A	129	133	parallel
Strand 4	A	48	53	parallel
Strand 5	A	9	14	parallel
Strand 6	A	158	163	parallel
Strand 7	A	214	218	parallel
Strand 8	A	236	239	anti-parallel
Strand 9	A	185	187	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	182	183	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	100	104	parallel
Strand 3	B	129	133	parallel
Strand 4	B	48	53	parallel
Strand 5	B	9	14	parallel
Strand 6	B	158	163	parallel
Strand 7	B	214	218	parallel
Strand 8	B	236	239	anti-parallel
Strand 9	B	185	187	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	182	183	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	100	104	parallel
Strand 3	C	129	133	parallel
Strand 4	C	48	53	parallel
Strand 5	C	9	14	parallel
Strand 6	C	159	163	parallel
Strand 7	C	214	218	parallel
Strand 8	C	236	239	anti-parallel
Strand 9	C	185	187	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	100	104	parallel
Strand 3	D	129	132	parallel
Strand 4	D	48	53	parallel
Strand 5	D	9	14	parallel
Strand 6	D	158	163	parallel
Strand 7	D	214	218	parallel
Strand 8	D	236	239	anti-parallel
Strand 9	D	185	187	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	182	183	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	114	first strand
Strand 2	E	100	104	parallel
Strand 3	E	129	133	parallel
Strand 4	E	48	53	parallel
Strand 5	E	9	14	parallel
Strand 6	E	158	163	parallel
Strand 7	E	214	218	parallel
Strand 8	E	236	239	anti-parallel
Strand 9	E	185	187	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	100	104	parallel
Strand 3	F	129	132	parallel
Strand 4	F	48	53	parallel
Strand 5	F	9	14	parallel
Strand 6	F	158	163	parallel
Strand 7	F	214	218	parallel
Strand 8	F	236	239	anti-parallel
Strand 9	F	185	187	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UY2