Analysis of interatomic Contacts of Structural Units in PDB entry:
9UY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UY9 entry

There are 9 chains in PDB entry 9UY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 45	ASP 682
B	ASN 45	ASP 682
C	ASN 45	ASP 682
H	VAL 2	SER 117
I	VAL 2	SER 117
J	VAL 2	SER 117
L	GLN 1	LEU 103
M	GLN 1	LEU 103
N	GLN 1	LEU 103

There are 21 helices in PDB entry 9UY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	138	Right-handed alpha
Helix 2	AA2	A	148	152	Right-handed 310
Helix 3	AA3	A	343	356	Right-handed alpha
Helix 4	AA4	A	464	503	Right-handed alpha
Helix 5	AA5	A	506	516	Right-handed alpha
Helix 6	AA6	A	610	614	Right-handed 310
Helix 7	AA7	A	650	657	Right-handed alpha
Helix 8	AA8	A	661	682	Right-handed alpha
Helix 9	AA9	B	128	138	Right-handed alpha
Helix 10	AB1	B	342	358	Right-handed alpha
Helix 11	AB2	B	464	503	Right-handed alpha
Helix 12	AB3	B	506	515	Right-handed alpha
Helix 13	AB4	B	610	614	Right-handed 310
Helix 14	AB5	B	650	657	Right-handed alpha
Helix 15	AB6	B	661	682	Right-handed alpha
Helix 16	AB7	C	128	138	Right-handed alpha
Helix 17	AB8	C	343	359	Right-handed alpha
Helix 18	AB9	C	464	503	Right-handed alpha
Helix 19	AC1	C	506	516	Right-handed alpha
Helix 20	AC2	C	650	657	Right-handed alpha
Helix 21	AC3	C	661	682	Right-handed alpha

There are 33 sheets in PDB entry 9UY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	528	529	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	81	87	anti-parallel
Strand 3	A	379	383	anti-parallel
Strand 4	A	370	373	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	93	104	anti-parallel
Strand 3	A	203	215	anti-parallel
Strand 4	A	222	224	anti-parallel
Strand 5	A	229	230	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	166	169	anti-parallel
Strand 3	A	179	183	anti-parallel
Strand 4	A	203	215	anti-parallel
Strand 5	A	93	104	anti-parallel
Strand 6	A	282	287	anti-parallel
Strand 7	A	274	279	anti-parallel
Strand 8	A	251	253	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	155	156	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	316	319	anti-parallel
Strand 3	A	324	327	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	528	530	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	301	first strand
Strand 2	B	81	87	anti-parallel
Strand 3	B	379	383	anti-parallel
Strand 4	B	370	373	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	93	104	anti-parallel
Strand 3	B	203	215	anti-parallel
Strand 4	B	222	224	anti-parallel
Strand 5	B	229	230	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	203	215	anti-parallel
Strand 3	B	93	104	anti-parallel
Strand 4	B	282	287	anti-parallel
Strand 5	B	274	279	anti-parallel
Strand 6	B	251	253	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	316	319	anti-parallel
Strand 3	B	324	327	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	385	386	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	301	first strand
Strand 2	C	81	87	anti-parallel
Strand 3	C	379	383	anti-parallel
Strand 4	C	370	373	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	203	215	anti-parallel
Strand 4	C	222	224	anti-parallel
Strand 5	C	229	230	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	203	215	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	282	287	anti-parallel
Strand 5	C	272	279	anti-parallel
Strand 6	C	251	257	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	166	167	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	309	first strand
Strand 2	C	316	319	anti-parallel
Strand 3	C	324	327	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	385	386	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	523	first strand
Strand 2	C	528	531	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	10	first strand
Strand 2	H	112	114	parallel
Strand 3	H	93	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	78	83	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	10	first strand
Strand 2	I	112	114	parallel
Strand 3	I	93	97	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	78	83	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	10	first strand
Strand 2	J	112	114	parallel
Strand 3	J	93	97	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	51	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	78	83	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	47	first strand
Strand 2	L	33	37	anti-parallel
Strand 3	L	83	88	anti-parallel
Strand 4	L	101	103	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	20	25	anti-parallel
Strand 3	M	69	74	anti-parallel
Strand 4	M	61	66	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	47	first strand
Strand 2	M	33	37	anti-parallel
Strand 3	M	83	88	anti-parallel
Strand 4	M	101	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	20	25	anti-parallel
Strand 3	N	69	74	anti-parallel
Strand 4	N	61	66	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	43	47	first strand
Strand 2	N	33	37	anti-parallel
Strand 3	N	83	88	anti-parallel
Strand 4	N	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UY9