Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UYA entry

There are 3 chains in PDB entry 9UYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LYS 511
B	THR 2	LYS 511
C	THR 2	PHE 279

There are 48 helices in PDB entry 9UYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	71	Right-handed 310
Helix 2	AA2	A	125	129	Right-handed 310
Helix 3	AA3	A	131	141	Right-handed alpha
Helix 4	AA4	A	179	192	Right-handed alpha
Helix 5	AA5	A	193	201	Right-handed alpha
Helix 6	AA6	A	233	249	Right-handed alpha
Helix 7	AA7	A	300	314	Right-handed alpha
Helix 8	AA8	A	336	348	Right-handed alpha
Helix 9	AA9	A	360	363	Right-handed 310
Helix 10	AB1	A	364	378	Right-handed alpha
Helix 11	AB2	A	424	430	Right-handed alpha
Helix 12	AB3	A	434	448	Right-handed alpha
Helix 13	AB4	B	67	71	Right-handed 310
Helix 14	AB5	B	125	129	Right-handed 310
Helix 15	AB6	B	131	139	Right-handed alpha
Helix 16	AB7	B	179	192	Right-handed alpha
Helix 17	AB8	B	193	201	Right-handed alpha
Helix 18	AB9	B	233	249	Right-handed alpha
Helix 19	AC1	B	300	314	Right-handed alpha
Helix 20	AC2	B	336	348	Right-handed alpha
Helix 21	AC3	B	360	363	Right-handed 310
Helix 22	AC4	B	364	378	Right-handed alpha
Helix 23	AC5	B	424	430	Right-handed alpha
Helix 24	AC6	B	436	448	Right-handed alpha
Helix 25	AC7	C	67	71	Right-handed 310
Helix 26	AC8	C	125	129	Right-handed 310
Helix 27	AC9	C	131	141	Right-handed alpha
Helix 28	AD1	C	179	192	Right-handed alpha
Helix 29	AD2	C	193	201	Right-handed alpha
Helix 30	AD3	C	233	249	Right-handed alpha
Helix 31	AD4	C	300	314	Right-handed alpha
Helix 32	AD5	C	336	348	Right-handed alpha
Helix 33	AD6	C	360	363	Right-handed 310
Helix 34	AD7	C	364	378	Right-handed alpha
Helix 35	AD8	C	424	430	Right-handed alpha
Helix 36	AD9	C	434	448	Right-handed alpha
Helix 37	AE1	D	67	71	Right-handed 310
Helix 38	AE2	D	125	129	Right-handed 310
Helix 39	AE3	D	131	141	Right-handed alpha
Helix 40	AE4	D	179	192	Right-handed alpha
Helix 41	AE5	D	193	201	Right-handed alpha
Helix 42	AE6	D	233	249	Right-handed alpha
Helix 43	AE7	D	300	314	Right-handed alpha
Helix 44	AE8	D	336	348	Right-handed alpha
Helix 45	AE9	D	360	363	Right-handed 310
Helix 46	AF1	D	364	378	Right-handed alpha
Helix 47	AF2	D	424	430	Right-handed alpha
Helix 48	AF3	D	436	448	Right-handed alpha

There are 20 sheets in PDB entry 9UYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	17	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	73	78	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	96	97	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	101	104	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	145	148	parallel
Strand 3	A	116	121	parallel
Strand 4	A	460	466	anti-parallel
Strand 5	A	470	478	anti-parallel
Strand 6	A	488	497	anti-parallel
Strand 7	A	503	506	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	269	273	anti-parallel
Strand 3	A	318	323	parallel
Strand 4	A	383	387	parallel
Strand 5	A	410	416	parallel
Strand 6	A	393	399	anti-parallel
Strand 7	A	451	455	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	17	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	73	78	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	101	104	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	207	first strand
Strand 2	B	145	148	parallel
Strand 3	B	116	121	parallel
Strand 4	B	460	466	anti-parallel
Strand 5	B	470	478	anti-parallel
Strand 6	B	488	497	anti-parallel
Strand 7	B	504	506	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	269	273	anti-parallel
Strand 3	B	318	323	parallel
Strand 4	B	383	387	parallel
Strand 5	B	410	416	parallel
Strand 6	B	393	399	anti-parallel
Strand 7	B	451	455	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	73	78	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	96	97	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	101	104	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	207	first strand
Strand 2	C	145	148	parallel
Strand 3	C	116	121	parallel
Strand 4	C	460	466	anti-parallel
Strand 5	C	470	478	anti-parallel
Strand 6	C	488	497	anti-parallel
Strand 7	C	504	506	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	265	first strand
Strand 2	C	269	273	anti-parallel
Strand 3	C	318	323	parallel
Strand 4	C	383	387	parallel
Strand 5	C	410	416	parallel
Strand 6	C	393	399	anti-parallel
Strand 7	C	451	455	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	17	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	73	78	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	66	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	66	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	101	104	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	207	first strand
Strand 2	D	145	148	parallel
Strand 3	D	115	121	parallel
Strand 4	D	460	467	anti-parallel
Strand 5	D	470	478	anti-parallel
Strand 6	D	488	497	anti-parallel
Strand 7	D	503	506	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	265	first strand
Strand 2	D	269	273	anti-parallel
Strand 3	D	318	323	parallel
Strand 4	D	383	387	parallel
Strand 5	D	410	416	parallel
Strand 6	D	393	399	anti-parallel
Strand 7	D	451	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYA