Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UYB entry

There are 4 chains in PDB entry 9UYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 515LYS 758
B
 GLY 515GLU 760
C
 GLY 515MET 762
D
 GLY 515PHE 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9UYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
520 537Right-handed alpha
Helix 2
AA2
A
541 555Right-handed alpha
Helix 3
AA3
A
558 568Right-handed alpha
Helix 4
AA4
A
569 581Right-handed alpha
Helix 5
AA5
A
584 600Right-handed alpha
Helix 6
AA6
A
601 609Right-handed 310
Helix 7
AA7
A
610 622Right-handed alpha
Helix 8
AA8
A
628 644Right-handed alpha
Helix 9
AA9
A
655 670Right-handed alpha
Helix 10
AB1
A
683 688Right-handed alpha
Helix 11
AB2
A
695 713Right-handed alpha
Helix 12
AB3
A
713 724Right-handed alpha
Helix 13
AB4
A
725 735Right-handed alpha
Helix 14
AB5
A
740 754Right-handed alpha
Helix 15
AB6
B
520 537Right-handed alpha
Helix 16
AB7
B
541 555Right-handed alpha
Helix 17
AB8
B
558 568Right-handed alpha
Helix 18
AB9
B
569 581Right-handed alpha
Helix 19
AC1
B
584 600Right-handed alpha
Helix 20
AC2
B
604 609Right-handed 310
Helix 21
AC3
B
610 621Right-handed alpha
Helix 22
AC4
B
628 644Right-handed alpha
Helix 23
AC5
B
645 649Right-handed 310
Helix 24
AC6
B
655 670Right-handed alpha
Helix 25
AC7
B
683 688Right-handed alpha
Helix 26
AC8
B
695 713Right-handed alpha
Helix 27
AC9
B
713 724Right-handed alpha
Helix 28
AD1
B
725 735Right-handed alpha
Helix 29
AD2
B
740 760Right-handed alpha
Helix 30
AD3
C
520 537Right-handed alpha
Helix 31
AD4
C
541 555Right-handed alpha
Helix 32
AD5
C
558 568Right-handed alpha
Helix 33
AD6
C
569 581Right-handed alpha
Helix 34
AD7
C
584 600Right-handed alpha
Helix 35
AD8
C
601 609Right-handed 310
Helix 36
AD9
C
610 620Right-handed alpha
Helix 37
AE1
C
628 644Right-handed alpha
Helix 38
AE2
C
645 649Right-handed 310
Helix 39
AE3
C
655 670Right-handed alpha
Helix 40
AE4
C
683 688Right-handed alpha
Helix 41
AE5
C
695 713Right-handed alpha
Helix 42
AE6
C
713 724Right-handed alpha
Helix 43
AE7
C
725 736Right-handed alpha
Helix 44
AE8
C
740 762Right-handed alpha
Helix 45
AE9
D
520 537Right-handed alpha
Helix 46
AF1
D
541 555Right-handed alpha
Helix 47
AF2
D
558 568Right-handed alpha
Helix 48
AF3
D
569 581Right-handed alpha
Helix 49
AF4
D
584 600Right-handed alpha
Helix 50
AF5
D
604 609Right-handed 310
Helix 51
AF6
D
610 620Right-handed alpha
Helix 52
AF7
D
628 644Right-handed alpha
Helix 53
AF8
D
655 670Right-handed alpha
Helix 54
AF9
D
683 688Right-handed alpha
Helix 55
AG1
D
695 713Right-handed alpha
Helix 56
AG2
D
713 724Right-handed alpha
Helix 57
AG3
D
725 735Right-handed alpha
Helix 58
AG4
D
740 754Right-handed alpha
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There are 2 sheets in PDB entry 9UYB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
B
678 679anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
B
516 517anti-parallel
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