Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UYH entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 9UYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	PHE 148	SER 157
A	THR 6	ASN 368
B	VAL 2	VAL 112
R	VAL 36	CYS 1358
R	ALA 1361	ALA 1361
R	LEU 1365	LYS 1367
C	ASP 2	VAL 242

There are 16 helices in PDB entry 9UYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	98	109	Right-handed alpha
Helix 3	AA3	B	86	90	Right-handed 310
Helix 4	AA4	R	37	66	Right-handed alpha
Helix 5	AA5	R	70	89	Right-handed alpha
Helix 6	AA6	R	89	97	Right-handed alpha
Helix 7	AA7	R	98	102	Right-handed 310
Helix 8	AA8	R	109	139	Right-handed alpha
Helix 9	AA9	R	150	169	Right-handed alpha
Helix 10	AB1	R	201	217	Right-handed alpha
Helix 11	AB2	R	217	226	Right-handed alpha
Helix 12	AB3	R	226	231	Right-handed alpha
Helix 13	AB4	R	241	273	Right-handed alpha
Helix 14	AB5	R	287	305	Right-handed alpha
Helix 15	AB6	R	308	317	Right-handed alpha
Helix 16	AB7	C	211	215	Right-handed 310

There are 15 sheets in PDB entry 9UYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	40	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	8	12	anti-parallel
Strand 5	R	1361	1363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	170	171	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	85	first strand
Strand 2	A	53	62	anti-parallel
Strand 3	A	140	150	anti-parallel
Strand 4	A	163	167	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	85	first strand
Strand 2	A	53	62	anti-parallel
Strand 3	A	140	150	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	290	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	220	221	anti-parallel
Strand 4	A	267	268	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	214	217	anti-parallel
Strand 4	A	273	274	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	345	351	parallel
Strand 3	A	319	328	anti-parallel
Strand 4	A	230	239	anti-parallel
Strand 5	A	252	258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	20	23	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	108	110	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	176	181	first strand
Strand 2	R	184	189	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	25	26	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	103	105	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	73	76	anti-parallel
Strand 3	C	63	66	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	143	149	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	192	197	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	156	163	anti-parallel
Strand 4	C	217	224	anti-parallel
Strand 5	C	231	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYH