Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UYI entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 9UYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	SER 147	SER 157
A	THR 6	ASN 368
B	VAL 2	SER 113
R	VAL 36	ARG 316
R	CYS 1358	CYS 1358
R	ALA 1361	ALA 1361
R	LEU 1365	LYS 1367
C	ASP 2	VAL 242

There are 12 helices in PDB entry 9UYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	109	Right-handed alpha
Helix 2	AA2	B	86	90	Right-handed 310
Helix 3	AA3	R	37	61	Right-handed alpha
Helix 4	AA4	R	70	99	Right-handed alpha
Helix 5	AA5	R	109	141	Right-handed alpha
Helix 6	AA6	R	150	174	Right-handed alpha
Helix 7	AA7	R	203	213	Right-handed alpha
Helix 8	AA8	R	215	230	Right-handed alpha
Helix 9	AA9	R	242	275	Right-handed alpha
Helix 10	AB1	R	285	305	Right-handed alpha
Helix 11	AB2	R	307	316	Right-handed alpha
Helix 12	AB3	C	80	84	Right-handed 310

There are 15 sheets in PDB entry 9UYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	9	11	anti-parallel
Strand 5	R	1361	1362	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	170	171	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	53	62	anti-parallel
Strand 3	A	84	85	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	53	62	anti-parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	288	290	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	200	203	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	316	330	anti-parallel
Strand 4	A	227	242	anti-parallel
Strand 5	A	249	255	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	20	23	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	108	112	parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	49	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	181	first strand
Strand 2	R	184	188	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	73	76	anti-parallel
Strand 4	C	64	66	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	103	105	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	103	105	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	98	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	141	149	anti-parallel
Strand 3	C	202	208	anti-parallel
Strand 4	C	192	197	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	156	163	anti-parallel
Strand 4	C	217	224	anti-parallel
Strand 5	C	231	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYI